Pairwise Alignments

Query, 418 a.a., integrase from Pseudomonas simiae WCS417

Subject, 413 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  443 bits (1139), Expect = e-129
 Identities = 209/404 (51%), Positives = 292/404 (72%)

Query: 1   MPAQTLRLSDRQLKGVKPASKDYVLTDGDGLQLRVRSNGSLLWNFNYREPVTKNRINMGL 60
           M  + + L++ Q+K  K + K+Y L+DGDGLQLRV++NG+ LW   Y  P+TK R N+  
Sbjct: 1   MAKRVVPLTNTQVKQAKESDKEYTLSDGDGLQLRVKTNGTKLWILKYTHPITKKRNNISF 60

Query: 61  GTYPELSLANARKMAVQARELLAQGIDPKVQRDTLNEAKRAETEHTFENVATAWFDLKKD 120
           G +P++SLA ARK   +A+ LLA  IDPK  +D     +RAE E+TF   +  W  LK++
Sbjct: 61  GCFPDVSLAEARKRRSEAKTLLALNIDPKQHKDEQLLKERAELENTFGKYSDRWLTLKRE 120

Query: 121 SVTPAYAEDIWRSLTLHVFPDLKTTPLAKITAPMVIELLRPIEAKGSLETVKRLSQRLNE 180
           SV P  A+  +R+L  H+ P L   P+  I    V+ +L P++A+G+LETVKRL + +NE
Sbjct: 121 SVKPETADKAYRALEKHILPKLGNVPIQDIKPRTVLSILEPVKAQGTLETVKRLCRIINE 180

Query: 181 IMTYGVNSGLIFANPLSGIRAVFKKPKKENMAALPPEELPELMLELANASIKRTTRCLIE 240
           +M   V SG I  N L+ I  +F  PK+++M  + PE LPELM  +ANA+I   TRCL+E
Sbjct: 181 VMRLAVASGDIEVNYLADITKLFPAPKRQHMVTIEPERLPELMQAIANANITLATRCLLE 240

Query: 241 WQLHTMTRPAEAATTRWSDIDFEKRIWTIPPERMKKRRPHSIPLSDQAMALLDILKSHSG 300
           WQLHTMTRP E+AT RW DIDF+ ++W IP ERMK +RPH+IPL++Q +ALL+I+K  S 
Sbjct: 241 WQLHTMTRPIESATARWQDIDFKNKVWVIPAERMKMKRPHTIPLTEQTLALLEIMKPISS 300

Query: 301 HREYVFPADRNPRTHANSQTANMALKRMGFQDRLVSHGMRSIASTILNEHGWDPELIEVA 360
           HREY+FP+++NP++H NSQ+ANMALKRMG++ +LVSHG+R++AST LNE G++P++IE A
Sbjct: 301 HREYIFPSNKNPKSHVNSQSANMALKRMGYKGQLVSHGLRALASTTLNEQGFNPDIIEAA 360

Query: 361 LAHVDKDEVRSAYNRADYIERRRTMMAWWSEHIQKAATGSLSAA 404
           LAHVDK+EVR AYNRA+Y+E+RR +M+WWS HI  A+  + S A
Sbjct: 361 LAHVDKNEVRKAYNRAEYLEQRRKLMSWWSSHITSASNCNTSLA 404