Pairwise Alignments

Query, 936 a.a., 4Fe-4S ferredoxin from Pseudomonas simiae WCS417

Subject, 1026 a.a., FAD linked oxidase domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  118 bits (296), Expect = 2e-30
 Identities = 163/679 (24%), Positives = 274/679 (40%), Gaps = 115/679 (16%)

Query: 18  DRRFDDPLSTLAFGTDASFYRLIPQLVIRVESEDEVVALLQWAQRDH---VAVTFRAAGT 74
           D+R+    + LA  TD S Y+ +PQ V+  +++ +V  ++  A +     V  + R  GT
Sbjct: 32  DKRYS---ARLAQATDNSVYQFLPQAVLYPKTQADVKLIMTLATKPEFKQVVFSARGGGT 88

Query: 75  SLSGQAISDSVLIVLGDNWNGR-EIRGQGTQIRLQPGVIGAQANAWLAPFGRKIGPDPAS 133
             +GQ+++  +++ L   +N   EI  +   +R+Q GV+    N  L P G    PD ++
Sbjct: 89  GTNGQSLTHGLILDLSRYFNQVIEINEKERWVRVQAGVVKDALNDALRPHGFFFSPDLST 148

Query: 134 INACKIGGIVANNASGMCCGTAQNTYHTLAGIRLVLADGSRLDTE--DATSVKAF----R 187
            N   +GG++  +ASG        T   +  +  VL DGS L+T+  D  +++A      
Sbjct: 149 SNRATMGGMINTDASGAGSLVYGKTSDHVLELISVLYDGSVLETKPLDLKALEALDALES 208

Query: 188 EQHGALLER-LATLGRETRANAELAAKIRHKYRLKNTTGLSLNALVDFDEPLD--ILSHL 244
              G  L+R +A + RE R   E      +++     TG  L  +  ++E +D   LS +
Sbjct: 209 PSLGQSLQRDIARMTREHRGEVESRFPKLNRF----LTGYDLKNV--WNETVDEFNLSRI 262

Query: 245 LVGSEGTLGFISAVTYDTVVDHPNKASALIVFPDVETCCNAVTVLKTQPVSAVELLDRRS 304
           L GSEGTL  I+    D       +    I +   ++       L    V+ VE +D + 
Sbjct: 263 LTGSEGTLAVITEAKLDITPLPKTRMMVNIKYDSFQSALRHAPDLVKAEVTVVETVDSKV 322

Query: 305 MR-------------SVQNKPG-------MPAFVQQLSENACALLIESRAAS-SSLLHEQ 343
           +               +++ PG       M  F  +  E      +E++     ++L  Q
Sbjct: 323 LNLAKQDIIWHSVSSLIEDVPGASIDGLNMVEFAGEPDE------VEAKVKQLEAMLDTQ 376

Query: 344 LALIMASLAQFPVEKQVDFTEDPTENARLWAIRKDTFPAVGAVRKTGTTV-IIEDVTFPV 402
           LA   A L  + V      T D      ++A+RK     +GA + +   +   ED   P 
Sbjct: 377 LAANEAGLLGYQV------TSDKASINTIYAMRKKAVGLLGATKGSRKPIAFAEDTAVPP 430

Query: 403 EQLAIGVNRLIELFDKHHYDEAILFGHALEGNLHFVFTQGFNSAEEVTRYQAFMDDVAQL 462
           E+LA  +     L D H      +FGH   G LH          ++    +   D VA L
Sbjct: 431 EKLADFILEFRALLDSHELQYG-MFGHVDAGVLHVRPALDMCDPQDERLLKTVSDQVAAL 489

Query: 463 VAVEFGGSLKAEHGTGRNMAPFVELEWGSDAYQLMWQLKRLLDPNGILNPDVVLSQ---- 518
             +++GG +  EHG G     +    +G   + L+ ++K   DPN  LNP  +++     
Sbjct: 490 -TLKYGGLMWGEHGKGVR-GEYGPSVFGETLFGLLEEVKGYFDPNNKLNPGKLVAPKGSG 547

Query: 519 --------------DPQIHLKHLKPLPAADELVDKCIECGFC------EPVCPSKGLT-- 556
                         D QI +   +  P     V  C   G C       P+CPS  +T  
Sbjct: 548 PLLYNVDSTKRGAFDRQIPVNTREAFPD----VMNCNGNGLCFNYSVYSPMCPSFKVTGD 603

Query: 557 --LSPRQRIVIWRD-IQAKKRAGVD------------------TTDLEAAYHY-----QG 590
              SP+ R  + R+ ++  +  GVD                  T   E  Y Y     + 
Sbjct: 604 RVQSPKGRAGLMREWLRLLEAEGVDVEALAKAKPLGWLQRTQNTLKKEREYDYSHEVMES 663

Query: 591 IDTCAATGLCAQRCPVGIN 609
           +  C A   C+ +CPV ++
Sbjct: 664 LKGCLACKACSSQCPVKVD 682