Pairwise Alignments

Query, 557 a.a., recombination and repair protein from Pseudomonas simiae WCS417

Subject, 1189 a.a., chromosome segregation protein SMC from Methanococcus maripaludis S2

 Score = 43.1 bits (100), Expect = 6e-08
 Identities = 23/85 (27%), Positives = 40/85 (47%)

Query: 415  LLVSANPGQPLKALAKVASGGELSRISLAIQVITAQTSRVPTLVFDEVDVGIGGPTAEIV 474
            LL+ A+P         V SGGE S  +LA        +  P  V DEVD  +    A ++
Sbjct: 1084 LLIDASPMNKKLQSLDVMSGGEKSLTALAFLFAIQHLNPAPFYVLDEVDAALDTKNAGLI 1143

Query: 475  GQLLRRLGDRGQVLTVTHLPQVAAQ 499
            G++++      Q + ++H  Q+ ++
Sbjct: 1144 GEMIKNASKDSQFIVISHREQMISK 1168



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 48/260 (18%), Positives = 103/260 (39%), Gaps = 33/260 (12%)

Query: 140 DTHRRLLDEYAGATDL--ARQVQLAAQRWRQTRQELERLSNSG-------DEQRARHQLL 190
           +TH +L +E      +  +++++       +T++E+E L            E  A+   +
Sbjct: 231 ETHVKLTEELKATKYILTSKKIEFLNGILEKTKEEIEALKEMKVCFLKEISEYDAKSNDI 290

Query: 191 SYQLEELESLGLGETELEQLEQEHKNLTNAETLLGICRQVVEQCSESDSGNVLNALTASL 250
             +L+ L +  L E   E++ + HK++   E  +                N   +L  +L
Sbjct: 291 RNRLQNLIN-ELNEKGNEEIMELHKSIKEMEVTVD---------------NDKKSLNGAL 334

Query: 251 NRLSSVNSGSGSLSEATT-------LLTSAQIQVEEAVGELNRFLDHFDADPARLQ-EIE 302
           + L +VNS S    +           + +  +Q E  +  L   +++ + +  +L+ ++E
Sbjct: 335 DDLKNVNSQSEKKGQDLVETRQKIETIRTETLQKEAEINALKTEMENLETEKKKLKSKVE 394

Query: 303 ERLDTIYTLARKHRIQPTEVATMQQKLLDEIETLNANDESIERLSGELASFARHYQEKAR 362
           E       L ++ R     +   Q +L +     NA +  I + S  LA      +   +
Sbjct: 395 ESETQTEILKQQERKLSERINESQNELYNFKNEFNALENEINKKSFNLAKNKETIETLQK 454

Query: 363 ELSDLRQQAATGLASAVELE 382
           EL ++R +     +   ELE
Sbjct: 455 ELEEIRSEHEDTKSLYKELE 474