Pairwise Alignments

Query, 378 a.a., carbamoyl phosphate synthase small subunit from Pseudomonas simiae WCS417

Subject, 366 a.a., glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit from Methanococcus maripaludis S2

 Score =  272 bits (695), Expect = 1e-77
 Identities = 150/375 (40%), Positives = 212/375 (56%), Gaps = 33/375 (8%)

Query: 6   ILALADGSIFRGEAIGADGQTVGEVVFNTAMTGYQEILTDPSYAQQIVTLTYPHIGNTGT 65
           IL L DG+I RGE  GA+ + +GE+VFNT+MTGY EILTDPSY  QI+T+TYP  GN G 
Sbjct: 4   ILVLEDGTIIRGEGFGAETEVLGELVFNTSMTGYVEILTDPSYKGQIITMTYPLEGNYGV 63

Query: 66  TPEDVESDRVWSAGLVIRDLPLVASNWRNTMSLSDYLKANNVVAIAGIDTRRLTRILREK 125
             E  ESD + + G V++D+            L ++LK  N+  I+G+DTR +TR +R K
Sbjct: 64  EKEWFESDGIKAEGFVVKDI--------TGKELDEFLKEYNIPGISGVDTRYITRKIRSK 115

Query: 126 GSQNGCIMVGDN----ISEEAAIAAAQGFPGLKGMDLAKVVSVKEKYEWRSTVWDLKTDS 181
           G     +    N      E   +     +P +  +DL   VS KE               
Sbjct: 116 GVIRSLLKTSTNPITKDEETELLKKVVDYPDISEIDLVPEVSTKET-------------- 161

Query: 182 HATIDAADLPYHVVAYDYGVKYNILRMLVERGCRVTVVPAQTPASDVLALQPDGVFLSNG 241
               +A D     V  D GVK +I+  LVERGC V  VP  +   ++++  PD V +SNG
Sbjct: 162 -VIYNAEDEKTRCVLIDCGVKQSIVDCLVERGCSVVKVPYNSKKEEIISYNPDFVLVSNG 220

Query: 242 PGDPEPCDYAIQAIKDVLETEIPVFGICLGHQLLALASGAKTLKMGHGHHGANHPVQDLD 301
           PGDPE     ++ +K+++   +PV GICLGHQ++ +A G KT K+  GH G N PV+D++
Sbjct: 221 PGDPENMSETVETVKNLIGM-LPVTGICLGHQIITIALGGKTYKLKFGHRGGNQPVKDVE 279

Query: 302 TGVVMITSQNHGFAVDEATLPSNVRAIHKSLFDGSLQGIERTDKS-----AFSFQGHPEA 356
           +G V ITSQNHGFA D+  +P+    +H +L D +++GI + + S      +S Q HPEA
Sbjct: 280 SGKVYITSQNHGFATDDKIVPAGSELMHMNLNDDTVEGIRKLESSDLKNTVWSVQYHPEA 339

Query: 357 SPGPNDVAPLFDRFI 371
            PGP+D   LFD  +
Sbjct: 340 GPGPHDARFLFDEMV 354