Pairwise Alignments

Query, 1073 a.a., carbamoyl phosphate synthase large subunit from Pseudomonas simiae WCS417

Subject, 1081 a.a., carbamoyl-phosphate synthase large subunit from Methanococcus maripaludis S2

 Score = 1107 bits (2862), Expect = 0.0
 Identities = 564/1069 (52%), Positives = 766/1069 (71%), Gaps = 23/1069 (2%)

Query: 3    KRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPAMAD 62
            KR DIK ++ILG+GPIVIGQA EFD+SG+QACK+L+EEG   ILVNSNPATI TD  +AD
Sbjct: 2    KREDIKKVMILGSGPIVIGQAAEFDFSGSQACKSLKEEGIYTILVNSNPATIQTDTNIAD 61

Query: 63   ATYIEPIKWQTVAKIIEKERPDALLPTMGGQTALNCALDLEREGVLEKFGVEMIGANADT 122
              Y+EP+  + + KIIEKE+PDA+LPTMGGQT LN A++L + G+LEK GVE++G+    
Sbjct: 62   KVYLEPLNPKILEKIIEKEQPDAILPTMGGQTGLNLAMELSKRGILEKHGVELLGSTESV 121

Query: 123  IDKAEDRSRFDKAMKSIGLACPRSGIAHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIA 182
            I+ +EDR  F+KAM+ I     +S   HS+EEA    + LG+P I+RP+FT+GGTGGGIA
Sbjct: 122  IETSEDRDLFNKAMEEINQPIAKSAAVHSVEEAIGATKELGYPAIVRPAFTLGGTGGGIA 181

Query: 183  YNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGV 242
             N EE  EI  +GL  S  K++LID+SL+GWKEYE EV+RDK D CI+VC++EN DPMG+
Sbjct: 182  NNEEELIEITKKGLKYSMIKQVLIDQSLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMGI 241

Query: 243  HTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVETGGSNVQFGICPNTGRMVVIEMNP 302
            HTG+SI  AP+QTL+D+ +Q LR+ASL ++R + +E GG NVQF + P     VVIE+NP
Sbjct: 242  HTGESIVTAPSQTLSDEFHQKLRDASLQIIRHLKIE-GGCNVQFAVNPEMTDYVVIEVNP 300

Query: 303  RVSRSSALASKATGFPIAKVAAKLAVGYTLDELSNDITGGKTPASFEPSIDYVVTKLPRF 362
            RVSRSSALASKATG+PIAK+AAK+A+G TLDE+ ND+T  +TPASFEP+IDYVV K+PR+
Sbjct: 301  RVSRSSALASKATGYPIAKIAAKIAIGRTLDEIQNDVTK-ETPASFEPTIDYVVVKIPRW 359

Query: 363  AFEKFAKADARLTTQMKSVGEVMAIGRTFQESLQKALRGLEVGVCGL---DEKLDLSNPE 419
             F+KF   D +L T MKS GE+MAIGR  +E+LQKA+R L++G  G+    +  + SN E
Sbjct: 360  PFDKFRTVDKKLGTSMKSTGEIMAIGRNLEEALQKAVRSLDIGRFGIIADGKDKEYSNSE 419

Query: 420  SMSVLKRELTVPGAERIWYVADAFRAGMTVEDIFGMNMIDPWFLVQIEDLIKEEEKVKTL 479
             + +L+        ER++ +A A   G +V+ I     I+P+F+ +I+ +I  +++++ +
Sbjct: 420  IVDILEHATD----ERLFVIAYALDKGWSVDGICERTGINPFFIEKIKKIIDCKKELEVI 475

Query: 480  GLASID----RDMMFRLKRKGFSDQRLAKLLGVTEKNLRTHRHKLEIFPVYKRVDTCAAE 535
                +D    ++++ + K  GFSD +++K+   TE  +R  R +LE+ PVYK VDTCAAE
Sbjct: 476  SRIPVDDEKLKEILLKAKSLGFSDVQISKIFSKTENEIRDLRKRLEVIPVYKMVDTCAAE 535

Query: 536  FSTDTAYLYSTYE-----EECEAAPSGRDKIMILGGGPNRIGQGIEFDYCCVHAALALRE 590
            F   T Y YS YE     E+ E+  S R K++ILG GP RIGQG+EFDY  VHA  AL+E
Sbjct: 536  FEAKTPYYYSAYERYFDEEQNESVSSDRKKVIILGSGPIRIGQGVEFDYSTVHAIFALKE 595

Query: 591  DGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKG----VIVQYGGQTP 646
             G E I+VN NPETVSTDYDTSD+LYFEP+  E+++ I+  E   G    VIVQ+GGQT 
Sbjct: 596  LGIEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFGGQTA 655

Query: 647  LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASK 706
            + LA  L  +GV I+GTSP +ID AEDR++F  ++E+L + Q   AT  SE++A++   +
Sbjct: 656  INLAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALKVVER 715

Query: 707  IGYPLVVRPSYVLGGRAMEIVYEEEELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAV 766
            IGYP +VRPSYVLGGRAM+IVY  E+LK Y+R+AVKVS+D P+L+D FL  A+E+DVDAV
Sbjct: 716  IGYPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVDVDAV 775

Query: 767  CDGTDVVIGAIMQHIEQAGVHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGLMN 826
            CDG  V IGAIM+HIE+AG+HSGDSAC +PP +L   + +++ E   K+ALELGV+GL+N
Sbjct: 776  CDGESVFIGAIMEHIEEAGIHSGDSACVIPPQTLSKEVIEKIAEHTTKLALELGVIGLLN 835

Query: 827  VQLALQGEDIYVIEVNPRASRTVPFVSKCIGVSLAMIAARVMAGKTLKEIGFTKEIIPNF 886
            +Q A++   +Y+IE NPRASRT+P+VSK +GV LA IA   + GK LKE+G+       +
Sbjct: 836  IQYAVKDGVVYIIEANPRASRTIPYVSKSVGVPLAKIATNAIMGKKLKEMGYFGLAKSKY 895

Query: 887  YSVKEAVFPFAKFPGVDPILGPEMKSTGEVMGVGDTFGEAFAKAQMGASEVLPTGGTAFI 946
             SVKEAVFPF K PGVDP+L PEMKSTGE +G+   FG+AF K+Q+ A+  LPT GT FI
Sbjct: 896  VSVKEAVFPFLKLPGVDPVLSPEMKSTGEAIGIDQDFGKAFYKSQLSANMELPTSGTVFI 955

Query: 947  SVRDDDKPLVAGVARDLINLGFEVVATAGTAKLIEAAGLKVRRVNKVTEGRPH-VVDMIK 1005
            SVR+ DK  +  +A+   NLGFE+VAT GTA+ +    + VR V K++E   + V+D+++
Sbjct: 956  SVRNRDKDNITKIAKKYHNLGFEIVATRGTARELRLFDIPVREVRKISESMQNSVLDLMQ 1015

Query: 1006 NDEVTLIINTTEGRQSIADSYSIRRNALQHKIYCTTTIAAGEAICEALK 1054
              EV LIINT+ G ++  D Y IRR A++  I C TT+    A  +A++
Sbjct: 1016 KGEVDLIINTSSGDKAKTDGYFIRRAAVELNIPCMTTLQGAYAAIKAIE 1064