Pairwise Alignments

Query, 493 a.a., transcription elongation factor NusA from Pseudomonas simiae WCS417

Subject, 493 a.a., transcription termination factor NusA/transcription termination factor NusA, C-terminal duplication from Pseudomonas stutzeri RCH2

 Score =  840 bits (2170), Expect = 0.0
 Identities = 435/493 (88%), Positives = 467/493 (94%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           MSKEVLLVVESVSNEKGVPA+VIFEALELALATATKKR+EDEVDLRVEINR  G+YETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPASVIFEALELALATATKKRYEDEVDLRVEINRQNGSYETFR 60

Query: 61  RWTVVEEADLDDPAIETWPSKVAQTHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKV 120
           RWTVV++   DDPA +    +  + +P AK+GDV EEKIESIEFGRIAAQTAKQVIVQKV
Sbjct: 61  RWTVVDDEHFDDPAHQLALDQAQERNPDAKLGDVFEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVR 180
           REAERAQVV+AYR+RLGEIISGTVKKVTRD+VIVDLGNNAEALLAREDII+RETFRVG R
Sbjct: 121 REAERAQVVEAYRDRLGEIISGTVKKVTRDSVIVDLGNNAEALLAREDIIARETFRVGAR 180

Query: 181 LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240
           +RALLKEIRTENRGPQLILSRTAP+MLIELFRIEVPEIAEGLIEVM ASRDPGSRAKIAV
Sbjct: 181 VRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMGASRDPGSRAKIAV 240

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300
           RSKDKRIDPQGACIGMRGSRVQAVSGE+GGERVDIVLWD+NPAQ VINAM+PAEVAAIIV
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGEIGGERVDIVLWDENPAQLVINAMAPAEVAAIIV 300

Query: 301 DEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRN 360
           DEDAHAMDIAV  DNLAQAIGRGGQNVRLASQLTGWTLNVMTE+DIQAKQQ ETGDILRN
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEADIQAKQQEETGDILRN 360

Query: 361 FIEELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKA 420
           FI+EL+VDE+LAQVLV+EGFTSLEEIAYVP+EEML I+GFDED VNELR RAKDRLLTKA
Sbjct: 361 FIDELDVDEELAQVLVEEGFTSLEEIAYVPMEEMLGIEGFDEDIVNELRTRAKDRLLTKA 420

Query: 421 IATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDRA 480
           IA EEKLADA PAEDLL+L+GMDK+LA+ELAVRGVITREDLAEQSIDDLLDIDGID++RA
Sbjct: 421 IANEEKLADAQPAEDLLALDGMDKELAVELAVRGVITREDLAEQSIDDLLDIDGIDEERA 480

Query: 481 GKLIMAARAHWFE 493
           GKLIMAARAHWFE
Sbjct: 481 GKLIMAARAHWFE 493