Pairwise Alignments

Query, 305 a.a., pseudouridine synthase from Pseudomonas simiae WCS417

Subject, 312 a.a., tRNA pseudouridine(55) synthase TruB from Vibrio cholerae E7946 ATCC 55056

 Score =  272 bits (695), Expect = 8e-78
 Identities = 143/305 (46%), Positives = 198/305 (64%), Gaps = 7/305 (2%)

Query: 5   KRIRRNVSGIILLDKPIGFTSNAALQKVRWLLNAEKAGHTGSLDPLATGVLPLCFGEATK 64
           +R  R + G+ILLDKP G +SN ALQKV+ L  AEKAGHTG+LDPLATG+LP+C GEATK
Sbjct: 4   RRKGRVIHGVILLDKPTGISSNDALQKVKRLYGAEKAGHTGALDPLATGMLPICLGEATK 63

Query: 65  FSQYLLDSDKGYETLMQLGKTTTTADAEGDVLQVRDVTVGRADIEAVLPGFRGEISQIPP 124
           FSQ+LLDSDK Y  + +LG+ T T+D++G V+Q R V V    + A +  FRGE  Q+P 
Sbjct: 64  FSQFLLDSDKRYRVIAKLGERTDTSDSDGQVVQTRPVHVDYDTLLACIAKFRGETDQVPS 123

Query: 125 MYSALKRDGQPLYKLARAGEVVEREPRSVTIARLELLACEGDTARLAVDCSKGTYIRTLV 184
           M+SALK  G+PLY+ AR G  V RE R +T+  +EL   EGD   + V CSKGTYIRT+V
Sbjct: 124 MFSALKYQGRPLYEYARQGIEVPREARKITVYEIELHRFEGDEVEMEVHCSKGTYIRTIV 183

Query: 185 EDIGEKLGCGAYVAELRRTQAGPFSLAQTVTLEELEAVHAEGGN------EAVDRFLMPS 238
           +D+GE LGCGA+V  LRR     +   + VTLE+L A+  +         + +D  L+P 
Sbjct: 184 DDLGEMLGCGAHVTMLRRVGVANYPYERMVTLEQLNALVEQAHRDEKAVADVLDPLLLPM 243

Query: 239 DSGLLDWPLLHFSEHSAFYWLNGQPVRAPDAPKFGMVRVQDHNGR-FIGIGEVSEDGRIA 297
           D+ +   P ++          +GQ V+   AP  GMVR+     + F+G+GE+ ++G++A
Sbjct: 244 DTAVEALPEVNVIPELMTLIQHGQAVQVSGAPSDGMVRITGGEQKLFLGVGEIDDNGKVA 303

Query: 298 PRRLI 302
           P+RL+
Sbjct: 304 PKRLV 308