Pairwise Alignments

Query, 701 a.a., polynucleotide phosphorylase/polyadenylase from Pseudomonas simiae WCS417

Subject, 573 a.a., Ribosomal protein S1 (NCBI) from Rhodospirillum rubrum S1H

 Score = 63.9 bits (154), Expect = 2e-14
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 615 GITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVE-KVTDILKEGQEV 673
           G+ A+  +G  +VG+V  I D+GAFV + PG +GLVH+S +S  +       I+   QEV
Sbjct: 279 GVAAKYPVGTKFVGRVTNITDYGAFVELEPGVEGLVHVSEMSWTKKNVHPGKIVSTSQEV 338

Query: 674 EVLVLDVD-NRGRIKLSIKDVAA 695
           EV++LDVD ++ RI L +K   A
Sbjct: 339 EVMILDVDPDKRRISLGLKQTMA 361



 Score = 49.7 bits (117), Expect = 4e-10
 Identities = 32/80 (40%), Positives = 47/80 (58%), Gaps = 2/80 (2%)

Query: 623 GKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEKVTDILKEGQEVEVLVLDVD- 681
           G+I  G V+ I D+GAFV+ L G DGL+H++ +S  R+   T+ L  GQ V+V V+  + 
Sbjct: 202 GEILEGVVKNITDYGAFVD-LGGVDGLLHVTDISWKRINHPTEALSIGQTVKVQVIRFNA 260

Query: 682 NRGRIKLSIKDVAAAKASGV 701
              RI L +K + A    GV
Sbjct: 261 ETQRISLGMKQLEADPWEGV 280



 Score = 42.7 bits (99), Expect = 5e-08
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 622 IGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARV--EKVTDILKEGQEVEVLVLD 679
           IG    G+++ I +FG F+ +    DG++H+S L   R   E V D  K+G  V+  VLD
Sbjct: 373 IGTEVEGEIKNITEFGLFIGLTGDIDGMIHLSDLDWNRSGDEAVKD-YKKGDVVQAKVLD 431

Query: 680 VD-NRGRIKLSIKDV 693
           VD  + RI L +K +
Sbjct: 432 VDVEKERISLGVKQL 446