Pairwise Alignments

Query, 701 a.a., polynucleotide phosphorylase/polyadenylase from Pseudomonas simiae WCS417

Subject, 713 a.a., RNA-binding transcriptional accessory protein from Methanococcus maripaludis S2

 Score = 70.5 bits (171), Expect = 3e-16
 Identities = 75/270 (27%), Positives = 123/270 (45%), Gaps = 33/270 (12%)

Query: 431 EITESNGSSSMASVCGASLALMDAGVPMKAPVAGIAMGLVK-------EGEKFAILTDIL 483
           +++ES G+   +SV    + L  A V +   V+GI +G+ K       E  KF    ++L
Sbjct: 465 KLSESLGAVVESSVNSVGVDLNTASVSLLNYVSGINIGIAKNIVAYRTENGKFESRKELL 524

Query: 484 GDEDHLGDMDFKVAGTAKGVTALQMDIKIKGITEEIMEIALGQALEARLNILGQMNQIIG 543
                LG   F+       +   +      G+  E  +IA         N+L ++N  I 
Sbjct: 525 -KVSKLGKKAFEQCAGFLRIPEGKNLFDNTGVHPESYKIAE--------NLLNELNISI- 574

Query: 544 QSRTELSENAPTMIAMKIDTDKIRDVIGKGGATIRAICEET-KASIDIEDDGSIKIFGET 602
               ++ E     I+ K+D +K+ + +  G  T+  I +E  K   D  +D    +    
Sbjct: 575 ---KDIKEKKIDKISEKVDIEKLAEKLDCGIPTLEDIIKELEKPGRDPREDLPKPVL--- 628

Query: 603 KEAAEAARQRVLGITAEAEIGKIYVGKVERIVDFGAFVNILPGKDGLVHISMLSDARVEK 662
                  R  VL +    E G I  G V  IVDFGAF++I    DGL HIS ++D  ++ 
Sbjct: 629 -------RSDVLELEDLKE-GMILKGTVRNIVDFGAFIDIGVHHDGLAHISEIADRFIKH 680

Query: 663 VTDILKEGQEVEVLVLDVD-NRGRIKLSIK 691
             D++  G  V+V+V+D+D ++ R+ LSIK
Sbjct: 681 PLDVISVGDIVDVMVMDIDFDKKRVSLSIK 710