Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 804 a.a., DNA gyrase, B subunit from Pseudomonas stutzeri RCH2

 Score =  367 bits (942), Expect = e-105
 Identities = 220/566 (38%), Positives = 326/566 (57%), Gaps = 24/566 (4%)

Query: 8   SYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHVIL 63
           +Y++ +I+VL GLD VRKRPGMY     D +  +H+  EV+DNS+DEALAGH   + + +
Sbjct: 6   TYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCSDISITI 65

Query: 64  HADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVV 123
           H D S+ V D+GRG+PVDIH EEGV   E+I+T LHAGGKF + +Y+ SGGLHGVG+SVV
Sbjct: 66  HTDESITVRDNGRGIPVDIH-EEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVV 124

Query: 124 NALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYFDSPKF 183
           NALS  + + ++R+G  ++  +  G     L  +G     ++GT ++F P  + F +  F
Sbjct: 125 NALSEELMLTIRREGKVWEQLYRHGVPQAPLAPVGETD--SSGTQIHFKPSAETFQNIHF 182

Query: 184 SISRLKHVLKAKAVLCPGLVVTFEDKGTGEKVEWHYEDGLRSYLEDSVSDFERLP-NEPF 242
           S   L   L+  + L  G+ +   D+ T ++  + YE GL +++  +  +  + P NE F
Sbjct: 183 SWDILAKRLRELSFLNSGVGIVLRDERTAKEELFKYEGGLSAFV--AYLNTNKTPVNEVF 240

Query: 243 CGSLAGNKEA-VDWALLWLPEGGDSVQES---YVNLIPTAQGGTHVNGLRQGLLDAMREF 298
             ++  +    V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  +
Sbjct: 241 HFNVQRDDGVGVEVALQW----NDSFNENILCFTNNIPQRDGGTHLAGFRSALTRNLNSY 296

Query: 299 CEYRNLLPRG-VKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDA 357
            E   L  +  +    +D  E +  ++S+K+ +P+FS QTK++L S E    V   +   
Sbjct: 297 IEQEGLAKKHKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKH 356

Query: 358 FSLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPM 414
           F+ +L EHP    A+    I+ A  R    KA +   RK       LPGKLADC  +DP 
Sbjct: 357 FADFLLEHPSEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 416

Query: 415 RSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIGV 474
            SEL++VEGDSAGGSAKQ R+++ QAILPL+GKILN  +    ++++SQEV  +  A+G 
Sbjct: 417 LSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 476

Query: 475 DPGAAD--MSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYR 532
             G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G+VY+A PPLY+
Sbjct: 477 GIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYVYIAQPPLYK 536

Query: 533 IDLGKEIYYALDEAERDGILDRLVAE 558
           +  GK+  Y  D+   +  L +   E
Sbjct: 537 VKRGKQEQYIKDDEAMEEYLTQSALE 562



 Score = 55.5 bits (132), Expect = 9e-12
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGDDFAATSEMMDML 611
           L+ L+ E  R +  V R+KGLGEMNP QL ETTMDPN RR++++T+ D   A  ++ + L
Sbjct: 723 LEWLMTEGTR-RHSVQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIGA-DQIFNTL 780

Query: 612 LAKKRAPDRKSWLES 626
           +     P R+ ++E+
Sbjct: 781 MGDAVEP-RRDFIET 794