Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 686 a.a., DNA topoisomerase IV subunit B from Sinorhizobium meliloti 1021

 Score =  444 bits (1142), Expect = e-129
 Identities = 270/651 (41%), Positives = 384/651 (58%), Gaps = 26/651 (3%)

Query: 3   TPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKSV 59
           T   S Y+A AIEVL GL+PVR+RPGMY   TD    +HL  EVIDNS+DEA+AGHA  +
Sbjct: 41  TSDGSDYDASAIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEAVAGHANFI 100

Query: 60  HVILHADHSLEVSDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHGV 118
            V L AD  L V+D+GRG+PV+ HP+  G   +E+++T LHAGGKF  K Y+ SGGLHGV
Sbjct: 101 DVNLDADGYLTVTDNGRGIPVENHPKFPGKSTLEVVMTVLHAGGKFDGKAYETSGGLHGV 160

Query: 119 GISVVNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYF 178
           G+SVVNALS  + V+V R+   Y+  F+ G     LE +G V  R  GT V F PDP+ F
Sbjct: 161 GVSVVNALSDDLEVEVARNRRLYRQRFSRGIAQGGLEDLGDVHNRR-GTRVRFHPDPQIF 219

Query: 179 DS-PKFSISRLKHVLKAKAVLCPGLVVTF--------EDKGTGEKVEWHYEDGLRSYLED 229
               +F  +RL  + ++KA L  G+ + +        E     ++  +H+  GL+ YL  
Sbjct: 220 GPHARFEPARLFRMARSKAYLFGGVEIRWSCDPALLPEGSEIPDRAVFHFPGGLKDYLAA 279

Query: 230 SVSDFERLPNEPFCGSL--AGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNGL 287
           ++     +  E F G    +G   +++WA+ W   GGD    SY N IPT +GGTH  GL
Sbjct: 280 TLGKEFTVTREIFAGKSEKSGGHGSLEWAVTWY--GGDQQIHSYCNTIPTPEGGTHEAGL 337

Query: 288 RQGLLDAMREFCEYRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAA 347
           R  L   ++ + E      R   +  +DV    A +LS+ ++EP+F GQTK++L++ EA 
Sbjct: 338 RIALTKGLKNYAELTQN-KRAAIVTTDDVMISAAGMLSVFIREPEFVGQTKDKLATVEAQ 396

Query: 348 AFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRLKA--SKKVERKRITQGPALPGKL 405
             V   ++D F  +L ++P     L +  +  A  R++    K+V RK   +   LPGKL
Sbjct: 397 RIVENALRDPFDHYLADNPAEAAKLLDWVVERAEERVRRRKEKEVSRKTAVRKLRLPGKL 456

Query: 406 ADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEV 465
           ADCA      +ELF+VEGDSAGGSAKQAR++  QAILPLRGKILN       ++ A+Q++
Sbjct: 457 ADCAQNTAEGAELFIVEGDSAGGSAKQARNRANQAILPLRGKILNVASAGREKLGANQQI 516

Query: 466 HNIAVAIGVDPGAADMSQ-LRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVY 524
            ++  A+G    +    + LRY +I I+ DAD DG HIA+LL   F Q    L+  GH+Y
Sbjct: 517 GDLVQALGCGTRSKYREEDLRYERIIIMTDADVDGAHIASLLITFFYQEMPELIRGGHLY 576

Query: 525 VAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETT 584
           +A+PPLYR+  G +  YA D+A R+ ++        RGK ++ RFKGLGEM P QL+ETT
Sbjct: 577 LAVPPLYRLSQGSKTLYARDDAHREELM--RTEFNGRGKVELGRFKGLGEMLPAQLKETT 634

Query: 585 MDPNTRRLVQLTLGD-DFAATSEMMDMLLAKKRAPDRKSWLESKGNLAEVL 634
           MDP  R L+++ + D DF  T + +D L+  K A  R  +++ +   A+ L
Sbjct: 635 MDPAKRTLLKVEIDDVDFEGTRDAVDSLMGTK-AEARFRFIQERAVFADNL 684