Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 665 a.a., Gram negative topoisomerase IV, subunit B (NCBI) from Rhodospirillum rubrum S1H

 Score =  454 bits (1167), Expect = e-132
 Identities = 270/640 (42%), Positives = 378/640 (59%), Gaps = 30/640 (4%)

Query: 2   ATPSASSYNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHAKS 58
           A   A +Y A +IEVL GL+PVR+RPGMY   TD    +HL  E++DN++DEA+AG+A+ 
Sbjct: 10  AAQPADAYTARSIEVLEGLEPVRRRPGMYIGGTDERALHHLVAEILDNAMDEAVAGYAQV 69

Query: 59  VHVILHADHSLEVSDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGLHG 117
           + + L  D S+ V D+GRG+P+D HP       +E+ILT LH+GGKF    Y+ SGGLHG
Sbjct: 70  IDIDLAVDGSVCVRDNGRGIPIDPHPRFPDKSALEVILTTLHSGGKFGGDAYKVSGGLHG 129

Query: 118 VGISVVNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKY 177
           VGISVVNALS  +RV+V RD   +   F  G     L+ IG    R  GT V F PD + 
Sbjct: 130 VGISVVNALSDSLRVEVARDRTLWAQDFCRGAPLGPLQKIGPAPNRR-GTQVRFHPDAEI 188

Query: 178 FDS-PKFSISRLKHVLKAKAVLCPGLVVTF--------EDKGTGEKVEWHYEDGLRSYLE 228
           F    +F  + L  + ++KA L  G+ + +        +D G   +  +H+ +GL  YL 
Sbjct: 189 FGPRARFKPALLHRMARSKAYLFRGVRIRWSCAPELLPDDAGVPAEDVFHFPNGLGDYLG 248

Query: 229 DSVSDFERLPNEPFCGS--LAGNKEAVDWALLWLPEGGDSVQESYVNLIPTAQGGTHVNG 286
            ++++   +    F G+  L  +   V+WAL W PE  +    SYVN IPT +GGTH  G
Sbjct: 249 HALANRPLVGGRTFAGTANLPDDMGTVEWALCW-PEDDEPFFNSYVNTIPTPEGGTHEAG 307

Query: 287 LRQGLLDAMREFCEYRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREA 346
           LR  L   +R F E          L  EDV    A + SM +++PQF GQTKE+L+S+EA
Sbjct: 308 LRNALTRGLRSFAEMSGNKKGAAALTAEDVVGGAAVMFSMFLRDPQFQGQTKEKLASQEA 367

Query: 347 AAFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRL--KASKKVERKRITQGPALPGK 404
              V   ++D F  WL   P+    L   A+  A  RL  + +K+  RK  T+   LPGK
Sbjct: 368 TRLVEQALRDPFDHWLTGAPDSANLLLTHALERADERLRRRQAKETSRKTATKKLRLPGK 427

Query: 405 LADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQE 464
           L+DC       +ELFLVEGDSAGGSAKQARD++ QA+LPLRGKILN       ++  +QE
Sbjct: 428 LSDCTRSTRQGTELFLVEGDSAGGSAKQARDRQTQAVLPLRGKILNVASASLDKLRGNQE 487

Query: 465 VHNIAVAIGVDP-GAADMSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHV 523
           + ++A A+G    GA D+  LRY K+ I+ DAD DG HIA+LL   F +    LV AGH+
Sbjct: 488 LSDLAEALGCGTRGAFDLEHLRYDKVVIMTDADVDGAHIASLLMTFFFREMPALVSAGHL 547

Query: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583
           Y+AMPPLYR+  G    YA D+A +D ++  +   K +GK +++RFKGLGEM P QLRET
Sbjct: 548 YLAMPPLYRLTQGGTSVYARDDAHKDQLMKTVF--KTKGKVEISRFKGLGEMPPAQLRET 605

Query: 584 TMDPNTRRLVQLTL--------GDDFAATSEMMDMLLAKK 615
           TM   TR+L+++T+         +D   T+++++ L+ +K
Sbjct: 606 TMAYATRQLLRVTVPGGKTEEDREDARETAKLVEELMGRK 645