Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 683 a.a., DNA topoisomerase IV subunit B from Rhodopseudomonas palustris CGA009

 Score =  444 bits (1143), Expect = e-129
 Identities = 273/651 (41%), Positives = 380/651 (58%), Gaps = 26/651 (3%)

Query: 2   ATPSASS--YNADAIEVLSGLDPVRKRPGMY---TDTSRPNHLAQEVIDNSVDEALAGHA 56
           A PS +   Y A  IEVL GL+PVR+RPGMY   TD    +HL  EVIDNS+DEALAGHA
Sbjct: 31  AKPSGAEDGYTAADIEVLEGLEPVRRRPGMYIGGTDEKALHHLFAEVIDNSMDEALAGHA 90

Query: 57  KSVHVILHADHSLEVSDDGRGMPVDIHPE-EGVPGVELILTKLHAGGKFSNKNYQFSGGL 115
             + V L AD  L VSD+GRG+PVD HP+      +E+I+  LHAGGKF +K Y+ SGGL
Sbjct: 91  TFIEVELTADGFLTVSDNGRGIPVDPHPKFPKKSALEVIMCTLHAGGKFDSKVYETSGGL 150

Query: 116 HGVGISVVNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDP 175
           HGVG+SVVNALS+ + V+V R    ++M F  G+    LE +G V  R  GT V F PD 
Sbjct: 151 HGVGVSVVNALSSRLEVEVARGQQLHRMVFERGHPKGKLESLGKVNNRR-GTRVRFKPDT 209

Query: 176 KYFDSPK-FSISRLKHVLKAKAVLCPGLVVTFED-----KGTGE---KVEWHYEDGLRSY 226
           + F +   F   RL  + ++KA L  G+ + ++      KG  +   + E+H+  GL+ +
Sbjct: 210 EIFGAKAAFKPQRLFKMARSKAYLFGGVKIRWKCDPELLKGIEDVPAEDEFHFPGGLKDF 269

Query: 227 LEDSVSDFERLPNEPFCGSLAGNKE--AVDWALLWLPEGGDSVQESYVNLIPTAQGGTHV 284
           L  ++ +   +  + F G    N    A +WA  W  +  D    SY N +PT  GGTH 
Sbjct: 270 LGAAIHNDTLVHPDIFAGKSGRNGAHGACEWAAAWTADA-DGFLSSYCNTVPTPDGGTHE 328

Query: 285 NGLRQGLLDAMREFCEYRNLLPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSR 344
           +GLR  LL  +++  E      R   +  EDV    A +LS+ ++EP+F GQTK+RL++ 
Sbjct: 329 SGLRSALLRGLKDHAERAGQGKRASSITSEDVMVGAAIMLSVFVREPEFQGQTKDRLATA 388

Query: 345 EAAAFVSGVVKDAFSLWLNEHPELGLALAELAINNAGRRLKA--SKKVERKRITQGPALP 402
           EA   V   +KD F  WL+ +P     L +  I  A  RL+    K++ RK   +   LP
Sbjct: 389 EAQKIVEQAIKDPFDHWLSGNPVQANKLLDFVIERAEERLRRRQEKEISRKTAVKKLRLP 448

Query: 403 GKLADCAGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLAS 462
           GKLADC       SELF+VEGDSAGGSAKQARD+  QA+LPLRGKILN       +V+A+
Sbjct: 449 GKLADCTSTAAEGSELFIVEGDSAGGSAKQARDRSTQAVLPLRGKILNVASAGKDKVVAN 508

Query: 463 QEVHNIAVAIGVDPGAADMSQ-LRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAG 521
            ++ ++  A+GV  G     + LRY +I I+ DAD DG HIA+LL   F +    L++ G
Sbjct: 509 AQLSDLIQALGVSTGVNYREEDLRYSRIIIMTDADVDGAHIASLLITFFYRQMPKLIDEG 568

Query: 522 HVYVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLR 581
           H+Y+A+PPLYR+  G +  YA D+A ++ +L +        K +V RFKGLGEM P QL+
Sbjct: 569 HLYLAVPPLYRLTHGAKTVYARDDAHKEELLKK--EFNANAKVEVGRFKGLGEMMPAQLK 626

Query: 582 ETTMDPNTRRLVQLT-LGDDFAATSEMMDMLLAKKRAPDRKSWLESKGNLA 631
           ETTMDP  R ++++  L DD   T+  ++ L+  K A  R +++  K   A
Sbjct: 627 ETTMDPAKRTMLRVVLLPDDRDGTANSVERLMGTK-AEARFAFISEKAEFA 676