Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 805 a.a., DNA gyrase subunit GyrB from Phaeobacter inhibens DSM 17395

 Score =  382 bits (981), Expect = e-110
 Identities = 232/566 (40%), Positives = 323/566 (57%), Gaps = 30/566 (5%)

Query: 7   SSYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHVI 62
           + Y AD+I+VL GL+ VRKRPGMY     D S  +H+  EV+DN +DEALAGHA  V V 
Sbjct: 9   AEYGADSIKVLKGLEAVRKRPGMYIGDTDDGSGLHHMVYEVVDNGIDEALAGHADRVVVK 68

Query: 63  LHADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 122
           +HAD S+ V+D+GRG+PV IH EEGV   E+I+T+LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 69  IHADSSVSVNDNGRGIPVGIHEEEGVSAAEVIMTQLHAGGKFDSNSYKVSGGLHGVGVSV 128

Query: 123 VNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYFDSPK 182
           VNALS  + +++ RDG E+   F  G  A  L+V+G  G + TGT V F      F + +
Sbjct: 129 VNALSDWLELRIWRDGKEHVARFERGDTAEHLKVVGDCGDQ-TGTEVRFLASTDTFSNLE 187

Query: 183 FSISRLKHVLKAKAVLCPGLVVTFEDKGTGEK--VEWHYEDGLR---SYLEDSVSDFERL 237
           +    L+  L+  A L  G+ +   D+   E+  VE  YE G++    YL+ S S     
Sbjct: 188 YLFETLEKRLRELAFLNSGVRIILIDERPAERLEVELFYEGGVKEFVKYLDRSKSPVMEA 247

Query: 238 PNEPFCGSLAGNKE--AVDWALLWLPEGGDSVQES---YVNLIPTAQGGTHVNGLRQGLL 292
           P       + G+++   V+ A+ W     DS  E+   + N IP   GGTHV G R  L 
Sbjct: 248 PI-----YITGDRDEIGVEVAMWW----NDSYHETVLPFTNNIPQRDGGTHVAGFRGALT 298

Query: 293 DAMREFCEYRNLLPR-GVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVS 351
             +  + +   +  +  V    +D  E +  VLS+K+ +P+FS QTK++L S E    V 
Sbjct: 299 RTINNYAQSSGIAKKEKVSFTGDDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPVVE 358

Query: 352 GVVKDAFSLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADC 408
            +V +  + W  E+P     +    I  A  R    KA +   RK       L GKL DC
Sbjct: 359 SLVNEKLAEWFEENPNQAKQIVGKIIEAALAREAARKARELTRRKTAMDVNYLAGKLKDC 418

Query: 409 AGQDPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNI 468
           + +DP ++E+FLVEGDSAGGSA+  RD+  QAILPLRGKILN        +L SQE+ N+
Sbjct: 419 SEKDPSKTEVFLVEGDSAGGSAQTGRDRMTQAILPLRGKILNVERARFDRMLGSQEIGNL 478

Query: 469 AVAIGVDPGAAD--MSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVA 526
            +A+G   G  +  + +LRY KI I+ DAD DG HI TLL   F +    L+E G++Y+A
Sbjct: 479 VMALGTGIGRDEFNIDKLRYHKIVIMTDADVDGAHIRTLLLTFFYRQMPELIEGGYLYIA 538

Query: 527 MPPLYRIDLGKEIYYALDEAERDGIL 552
            PPLY++  GK   Y  D+A  D  L
Sbjct: 539 QPPLYKVSRGKSEVYLKDQAALDEYL 564



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 8/98 (8%)

Query: 524 YVAMPPLYRIDLGKEIYYALDEAERDGILDRLVAEKKRGKPQVTRFKGLGEMNPPQLRET 583
           Y A   L R D  + I+  L      G+L  ++ E ++G   + R+KGLGEMNP QL ET
Sbjct: 702 YGATATLVRRDRSQAIHGPL------GLLKAILEEGEKGLA-LQRYKGLGEMNPDQLWET 754

Query: 584 TMDPNTRRLVQLTLGDDFAATSEMMDMLLAKKRAPDRK 621
           T+DP+ R L+Q+ + +D     ++   L+     P R+
Sbjct: 755 TLDPDARTLLQVRV-EDMVEADDLFTKLMGDVVEPRRE 791