Pairwise Alignments

Query, 338 a.a., SAM-dependent methyltransferase from Pseudomonas simiae WCS417

Subject, 380 a.a., class I SAM-dependent rRNA methyltransferase from Methanococcus maripaludis S2

 Score = 53.5 bits (127), Expect = 8e-12
 Identities = 62/303 (20%), Positives = 131/303 (43%), Gaps = 38/303 (12%)

Query: 11  ALDHRQDLINELHAQGSDCYRLFHGSQEGAGGLTVDRYGPQLLVQSFHHPLETAELLDLH 70
           A ++R D++N       D YR+ +   +    + +D+Y     +Q     ++    L + 
Sbjct: 81  ANNYRTDILNY-----KDTYRMIYAEADYLPSIILDKYNKIASIQISSKIMDNYSDL-IF 134

Query: 71  QQVNQCLGLELLLVYNDRSRGNSRIDRDDTVYRAEPAALEDLVGH-EWGLNYRVRGRHAG 129
           + +++   +E + V + +   + +     T    + + +E ++       N  ++G   G
Sbjct: 135 ECISEITDVETMYVQSGKKGSDVK-----TKIFGDKSQIETVISEGNAKFNVNMKGHKTG 189

Query: 130 QDPLLFLDLRNTRGWVKAH-SAGKSVLNLFAYTCGVGLSAAAGGAREVCNLDFAEGNLAV 188
                FLD R+ R  ++ +   G  VL++ +YT G  + A   G  EV  +D +E  LAV
Sbjct: 190 ----FFLDQRDNRIDLENYVKPGDKVLDICSYTGGFAVHAGIKGG-EVTAVDLSEKALAV 244

Query: 189 GRENGLLNPQLPTMEFVQSDYFPAIRQLAGLPITQRRGQKLPSYPRLEQRQYDLVLLDPP 248
             EN  LN ++     + S+ F A++++                      ++D+V+LDPP
Sbjct: 245 AEENMELN-RVKNYNCMVSNAFDAMKEMIK-----------------NNEKFDVVVLDPP 286

Query: 249 AWAKSAFGTVDLLRDYQSLLKPALLATADNGVLICCNNLAKVSMEDWREHVLRCAEKAGR 308
           A+  S+    + L  Y S+    L       +L+ C+    +  E ++  ++  + +A +
Sbjct: 287 AFTDSSKDIKNALNAYNSMNYLGLKLA--KRILVTCSCSHHIDRESFKHTIVSSSLRAKK 344

Query: 309 PVR 311
            +R
Sbjct: 345 EIR 347