Pairwise Alignments

Query, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 476 a.a., two component, sigma54 specific, Fis family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  287 bits (734), Expect = 6e-82
 Identities = 177/458 (38%), Positives = 257/458 (56%), Gaps = 36/458 (7%)

Query: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTE- 62
           +LIV+DE  +RS L++ L +    V  AGSV++A++  S   FDL++ D+RLPG  G E 
Sbjct: 33  VLIVDDEPGMRSFLKKALSKKFALVETAGSVEDAEQLRSRCHFDLLIVDIRLPGRSGIEW 92

Query: 63  ---LIKLGQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSP 119
              L    + + ++ MT YA +  A+ +++ GA D+I KPF  ++M++AV R +  R   
Sbjct: 93  DEALSDQERRSDIIFMTGYADMDVAIKALRAGASDFIMKPFHLEQMMKAVDRCIERRLLK 152

Query: 120 SSAPAEQRPAGKAADKPGVDNSNGEIGIIGSCPPMQDLYGKIRKVAPTDSNVLIQGESGT 179
                 +R                   IIGS   M ++   I +VAPT++ +LI+GESGT
Sbjct: 153 RENLMLRREVSIGQSST----------IIGSSDAMMEVKHVIERVAPTNAVILIEGESGT 202

Query: 180 GKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGRAGLVEAAD 239
           GKELVAR LH LS R + P + VNC AI   L+ESELFGH  G+FTGA   R GL   A 
Sbjct: 203 GKELVARQLHLLSGR-QGPFVPVNCGAIAPELLESELFGHAAGSFTGAKGNREGLFSFAS 261

Query: 240 GGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDLKSLAKIGQ 299
           GGT+FLDEIGE+PL+ Q  LLRVL++  IR VGS +   +DVR++AAT+R L    + G 
Sbjct: 262 GGTIFLDEIGEMPLKMQTALLRVLEQRTIRPVGSEKEINIDVRVLAATNRKLADEVEAGN 321

Query: 300 FREDLYYRLHVIALKLPALRERGADVNEIAHAFLLRQSARINRTDLKFAPDAEQAIRHYS 359
           FR DL+YRL+V+ + +P LRER  DV E+ H F    +A +   ++ ++ +    ++ + 
Sbjct: 322 FRRDLFYRLNVLDIVIPPLRERPEDVVELTHHFTRLLAAELGVKEVVWSHEDMLKLQQHE 381

Query: 360 WPGNVRELENAVERAVILSESPEISAELLGIDIELSDLEDDDFIGLAPSQGGSNTSHEPT 419
           WPGN+REL N +ER ++L + P                   ++    P    +     P 
Sbjct: 382 WPGNIRELRNMIERCILLGKPPA------------------EYWKQQPKSEATGELGYPL 423

Query: 420 EDLSLEDYFQHFVLEHQD--HMTETELARKLGVSRKCL 455
            D SL++  +H V    D     ++  AR LGVSRK L
Sbjct: 424 -DWSLKEVEKHHVTSVVDLHQGNKSAAARDLGVSRKTL 460