Pairwise Alignments

Query, 345 a.a., ABC transporter permease from Pseudomonas simiae WCS417

Subject, 380 a.a., iron-compound ABC transporter, permease protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  156 bits (394), Expect = 9e-43
 Identities = 119/366 (32%), Positives = 178/366 (48%), Gaps = 31/366 (8%)

Query: 2   TTLVKPKTLFVGLALLCVLAIWLSLALGPVSLPLLDTL-----KAALRLMGLPIEAQGLE 56
           T L + + L + L    +L    + + G  ++  LD       K +   MG    +    
Sbjct: 16  TPLTRQQWLMLALVGFTLLTPIAAASFGAANISFLDVFNVFIDKFSQLFMGENAPSTAAM 75

Query: 57  QAELILGQIRLPRTLLGLAVGGVLALSGVAMQGLFRNPLADPGLVGVSSGAALGAAV--- 113
              +++ ++RLPR LL    G  L+L+G  +Q + RNPLADP L G+SSGA+ GA V   
Sbjct: 76  TDRIVM-ELRLPRILLAFVAGAGLSLAGSVLQTVTRNPLADPYLFGISSGASFGAVVMLT 134

Query: 114 ------------AIVGGSFFGGLPDAFGP--YLLSFCAFLGGLGVTALVYRLGRRNGQTN 159
                        I     F G     G   + L F AF+G      +V  L      + 
Sbjct: 135 LFSGSGFFANAGVIANSGIFSGAEILAGLQWFSLPFGAFIGASLSVLIVLALSGLGLNSQ 194

Query: 160 VATMLLAGIALTALASSAVGLFTYLADDATLRTLTFWNLGSLNGASYSRL---WPLLLVS 216
           V  MLL+G+A + +  +   L  Y A      ++ FW+LGS   AS+S L     ++LVS
Sbjct: 195 VERMLLSGVATSFMFGALTSLLLYFASPQATASVLFWSLGSFAKASWSLLILPTIVVLVS 254

Query: 217 AGVAMWLPRRAKALNALLLGESEANHLGIDVEGLKRELVFCTALGVGAAVAAAGMIGFVG 276
             + +   R+  AL A   G+  A+ LG++V  L+  ++   +L     VA  G IGFVG
Sbjct: 255 FFIILGWKRQIMALQA---GDETAHTLGVNVPKLRLNMLLLCSLITAILVATCGGIGFVG 311

Query: 277 LVVPHLVRLLAGPDHRVLLPASVLAGASLLLFADLVARLALAPAELPIGIVTAFIGAPFF 336
           L++PH VRLL      +LL A  L G   +++ D++AR  L   ELP+GI+TA IG+ FF
Sbjct: 312 LMIPHTVRLLFPGRQPILLTA--LVGGLFMVWIDVLARCLLGNQELPVGIITASIGSFFF 369

Query: 337 LYLLLR 342
           L +L R
Sbjct: 370 LLILRR 375