Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas simiae WCS417

Subject, 1182 a.a., exodeoxyribonuclease V, beta subunit from Pseudomonas stutzeri RCH2

 Score =  546 bits (1407), Expect = e-159
 Identities = 437/1244 (35%), Positives = 608/1244 (48%), Gaps = 121/1244 (9%)

Query: 11   PLKGSQLIEASAGTGKTFTISALYLRLVLGHGGDESSFGRELLPPQILVVTFTDAATKEL 70
            P  G  LIEASAGTGKT+T++ALY RL+L          R+L   QILVVT+T AAT EL
Sbjct: 9    PFDGRSLIEASAGTGKTWTLTALYARLLLE---------RQLSVGQILVVTYTTAATAEL 59

Query: 71   RERIRIRLAEAARFFREEIEQPDALIADLRADYLPEQWPACANRLDIAAQWMDEAAVSTI 130
            RERIR RLA+    + +     D  +  L A Y  E       RL +A    DEAA+ TI
Sbjct: 60   RERIRARLADLLAVY-DGTPSTDDFLNRLHARYPDEP---SRRRLLLAVHGFDEAAIFTI 115

Query: 131  HSWCQRMLREHAFDSGSLFTQTLETDHSDLLGEVLRDYWRLFCYPMHDDALNWVRSHWGG 190
            H +CQR L++ AF++G  F   L  D  +++  +L D WR            ++      
Sbjct: 116  HGFCQRALQDAAFEAGGDFDSELTADDREIIDALLADAWRSELADADPAWARFLAKSRIT 175

Query: 191  PAALMPRVRALFGSERPTDETREPAELITACLQERREALTTLKAPWQQWATELRDICLQA 250
            P  L  R+R+  G  +P          + A L+        ++A WQ+ A   +      
Sbjct: 176  PVWLRQRLRSHLG--KPYLRVEPQGAPVAADLRP-------VEAAWQRAADLWKRAGSAW 226

Query: 251  VAAKAVDGRKMQARY----FEPWFEKISAWAADETLEQLDIGTGFTRLTPDGMAEAWKGE 306
            VA     G   Q+ +    F  W   + A+ AD  +   D+  G  +     + +A K  
Sbjct: 227  VAELLAHGGLSQSTHKSIKFASWQMDLDAYFADPAV-MFDLPEGAAKFGVRALTKACK-- 283

Query: 307  PPQHPGIDA-MAGLKAALDALPTPDAAVLQHAAGWV-----------GKRFEEEKRRRAE 354
                 G DA +  L  ALD L    A  L      +            +   E K  +  
Sbjct: 284  ----KGHDAPVCELAHALDELADQVAEALPAGKQRLIALQVALLERLNRELPERKAAQRL 339

Query: 355  MGFDDMLIRLNAALQADGGERLASVVREQFPVALIDEFQDTDPVQYSIFDSIYRIEENHL 414
            + FDD+L RL+ ALQ   GE LA+ +R  +P+ALIDEFQDTDP+QY+IF+ IY       
Sbjct: 340  LAFDDLLNRLDQALQGPVGEDLAASLRATYPLALIDEFQDTDPIQYAIFNRIYA---KGS 396

Query: 415  DSGLFLIGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRA 474
            ++ L  +GDPKQAIYAFRGAD+ TY+ A+Q        L TN+RS+  ++ A+N +F   
Sbjct: 397  EASLCFVGDPKQAIYAFRGADLATYMTAKQQADREPFNLPTNYRSTPELIAALNQLFDHP 456

Query: 475  ETGRGAFLFREPDGVNPVPFHSVLSQGRKEQLQVDGQTLPAMNLWHLPTDQPVSNVIYRQ 534
            +       F +PD   P P  +        +L  +G+  P   +W    D P+      Q
Sbjct: 457  QP------FAQPDLRYP-PVGAADKPRAGLRLLEEGEAAPLSLVWL--GDDPLGKGEAAQ 507

Query: 535  QLAAACATHIVELLNGGQQGSAGFLQPDGSFKGVRPSDIAILVRDGKEAQAVRGELAARG 594
              A+  A  I   L G  +G AGF   DG F  ++  DIA+LV + ++A  +  ELAARG
Sbjct: 508  LAASDTARRIALQLAGAAEGRAGF-DKDGVFTPLKGGDIAVLVANHRQAGMIADELAARG 566

Query: 595  VRSVYLSDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERLNQDE 654
            V SV    +DSV+ ++EA +L A L A AEP  E  LR ALA   L  S A+L R   D+
Sbjct: 567  VPSVRRG-RDSVWRSEEAGELAAVLAAYAEPGREGLLRYALATRLLGRSAADLARCQDDQ 625

Query: 655  LAWESRVMQFRGYRTIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQ 714
              W++       Y  +W+ QG + + R  L +  + + L+AR DGER LTNLLHL ELLQ
Sbjct: 626  QQWDAEREAAERYHQLWQQQGFMRVFRAWLDEQAVAERLLARVDGERRLTNLLHLGELLQ 685

Query: 715  QAASELDGEQALIRHLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLP 774
              +    G + L+          G AGEE +LRLESD + V++VTIH SKGLEY LVF P
Sbjct: 686  AESLLRPGLEPLLAWFNAQRGSEG-AGEEALLRLESDAERVQIVTIHTSKGLEYPLVFCP 744

Query: 775  FICSAKPVDGSRLPLHYHDENGKSHVSLRP--TPELIAQADNERLAEDLRLFYVALTRAK 832
            F+   K +  +R     HD  G+  + L      + + +A  E  AE LRL YVALTRA+
Sbjct: 745  FLWDGKLLGKNRDSARCHDAQGQPLLDLGSGELEDNLERARQEVFAEQLRLAYVALTRAR 804

Query: 833  HACWL--GIADL----KRGNSNNSVLHLSALGYLLGAGASLGES--AGLARWLLDLQEGC 884
               WL  G  +L    K G+  +  LH SAL +LL      GE   + L  +L D   G 
Sbjct: 805  DRLWLHWGPVNLCKPKKDGSLADEGLHSSALAWLLHGRELPGEQPLSELGNYLADFNGGS 864

Query: 885  TAIHYGQVPEAQDN---LFHPPRNEATLRAP---LLPKRKAAEN------WWIASYSALR 932
              +   ++ +  D           EA+ + P   + P++ +  N      W I S+S L 
Sbjct: 865  LRLAIERLVQGSDGRMACLPLESREASAQGPGRAVPPQQLSQLNRNLHSAWRIGSFSGLA 924

Query: 933  IGDSMSAATLEAPESPQAQKLFDDERLDPDAPREVAASGGDIHRFPRGPNPGTFLHGLLE 992
             G  M A   +A   P A +                  G     FPRG   GT LH +LE
Sbjct: 925  AGMHMEAPDRDALAIPDAGE-----------------PGSGFFAFPRGARAGTCLHAVLE 967

Query: 993  -WA-GEDGFNVTPEAIEKAVGARCNRRNWEGWIITLSSWLGHLLQTPLPVNNSHVSLSGL 1050
             WA G+       E   +A G          W    ++ L  +L+T +  +   ++L+ L
Sbjct: 968  DWARGKGELEALVEPALQAYGLPLE------WQEIATAHLQKVLETDM--DGGGLTLAAL 1019

Query: 1051 QQYQI--EMEFWFASHKVDVLALDKLVCQYTHNGVSRVAAEPVL------LNGMFKGFID 1102
            Q  +   E+ F F    +DV  L  L+     NG++    E         L G  KGFID
Sbjct: 1020 QSARRLPELGFTFPVRDLDVARLRALLVDPA-NGLAEPLREAAARLEFDSLKGFLKGFID 1078

Query: 1103 LTFEHDGRYYVADYKSNWLGPDDSAYTFDAMEQSILDHRYDLQYVLYLLALHRQLKARLP 1162
            LTFEHDGR+Y+ADYKSNWLGPD S Y  + + Q++    Y LQY++YL+AL R L+ RL 
Sbjct: 1079 LTFEHDGRWYIADYKSNWLGPDASYYGGERLLQALAGEHYYLQYLIYLVALRRFLRQRLA 1138

Query: 1163 DYDYDRHVGGALYIFLRGTQSASQGAYFTRPPRELIEGLDLLFQ 1206
            D+ +D  +GGA Y+FLRG   A  G YF RP   L++ LD LF+
Sbjct: 1139 DF-HDEQLGGAFYLFLRGMPEA--GVYFARPDDALLDALDRLFE 1179