Pairwise Alignments

Query, 315 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 303 a.a., DNA-binding transcriptional activator GcvA (RefSeq) from Shewanella amazonensis SB2B

 Score =  146 bits (368), Expect = 7e-40
 Identities = 98/295 (33%), Positives = 151/295 (51%), Gaps = 11/295 (3%)

Query: 1   MAQRPPPTPMLQAFVSAAQAGSFARAASDLNLTASAISHQIAGLEEWWGVQLFERHSRGV 60
           M++R PP   ++AF +AA+  SF RAA +L +T +A+SHQI  LE++ G++LF R +R +
Sbjct: 1   MSRRLPPLNAVKAFEAAARHLSFTRAAEELFVTQAAVSHQIKALEDFLGLKLFRRKNRSL 60

Query: 61  KLTPAGQA-LLPVTDGFFKALDGVLQSLNPGKSRPLYLSCTSSLCSTWLIPRMHGSHTEA 119
            LT  GQ+  L + D F +  D   + L       L +S + S    WL+PR+    +E 
Sbjct: 61  LLTEEGQSYFLDIKDIFTQLSDATDRLLARSAIGSLTVSMSPSFAIQWLVPRL-AKFSEK 119

Query: 120 SFNLDLVLTSADMNSTSLEAHQYDVAVVMGYGDYPDHHVELLMCDAVFPVCSPEFLRLKG 179
           + ++D+ + + D    SL     DVA+  G G +P    + L  + + PVCSP  + L G
Sbjct: 120 NPDIDVRIKAVDSEEGSL-TDDVDVAIYYGQGSWPGLRADKLRNEVLIPVCSP--MLLNG 176

Query: 180 DISLE---DVARYPLIHRVDDQVCPGWESWFAFQGLAAPPYHHGPRFPDSSLAISLAVKG 236
              LE   D+  + L+H   D     W++WF   G+     + GP F  SSL +  A  G
Sbjct: 177 HKPLETPADLKHHTLLH---DMSRHDWQAWFRQCGVTDVNVNQGPIFSHSSLVLQAAAHG 233

Query: 237 TGIALGRTALVYDLLADGALVALKSPVMMSPAAYYIICQNGRQLEPDIARLIEWL 291
            G+ALG + L    +  G LV     V++S  AYY++CQ        I    EW+
Sbjct: 234 QGVALGYSVLARPDIKAGRLVVPFQEVLVSKDAYYLVCQQNHAELGKIVAFREWM 288