Pairwise Alignments

Query, 286 a.a., RpiR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 284 a.a., DNA-binding transcriptional regulator HexR (RefSeq) from Shewanella amazonensis SB2B

 Score =  114 bits (285), Expect = 2e-30
 Identities = 79/286 (27%), Positives = 144/286 (50%), Gaps = 7/286 (2%)

Query: 1   MDILYQIRARQDAFSAGEGRIAKLMLNDVGFAASASLEELSQRAEVSTATLSRFARSVGC 60
           M+ L +++   + FS  E ++A+++L     A  +S+  L++ A+VS  T++RF R +  
Sbjct: 1   MNTLEKVQKSLNQFSKSERKVAEVILASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDT 60

Query: 61  RDLRDLRLQLAQASGVG----SRFLDPAGLPEQSAFHRQILGDIEATLRQHLSGFNQASF 116
           +   D +L LAQ+   G    SR ++    PE  ++  +I     A+L       +  + 
Sbjct: 61  KGFPDFKLHLAQSLANGTPYVSRHVEEDDSPE--SYTTKIFESSMASLDTARQSLDMQAI 118

Query: 117 VDAVSLLGKARMIHAFGMGGPSSLCSDELQVRLVRLGYPIAACHDPVMMRVTAATLGPEH 176
             AV +L +A+ I  FG+G  +++  D  Q +  R   P+    D +M R++        
Sbjct: 119 NKAVDILTQAKTISFFGLGASAAVAHDA-QNKFFRFNVPVICFDDVLMQRMSCINSNEGD 177

Query: 177 ALIVCSLTGLTPELLDVVTLARNYDARIVAITLADSPLAQLADVLLPLQPAETSFIYKPT 236
            +++ S TG T  L+D+  LAR   A ++ IT  +SPL+    + + ++  E + +Y P 
Sbjct: 178 VVVLISHTGRTKSLIDIARLARENGAAVIGITARNSPLSVECTLSVTMEVPEDTDMYLPM 237

Query: 237 AARYGLLLAIDLLATELALALPDDNQERLRRIKLALDDYRGGPDSL 282
           A+R   L+ ID+LAT   L      ++ L+R+K AL + R   D +
Sbjct: 238 ASRLAQLVVIDVLATGFTLRRGPRFRDSLKRVKEALKESRINKDPI 283