Pairwise Alignments

Query, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

Subject, 438 a.a., outer membrane protein TolC from Vibrio cholerae E7946 ATCC 55056

 Score =  260 bits (664), Expect = 7e-74
 Identities = 167/453 (36%), Positives = 249/453 (54%), Gaps = 25/453 (5%)

Query: 4   KLSLALAVSCATNGM---VWAAEAPLSANTDLVSVYQEAVDNNADLAAARAQYGAQKEVV 60
           K  L L VS A   +   VWA         +L  +Y +A +N+  L +  AQ  A  E V
Sbjct: 2   KKLLPLFVSAALGTLSSAVWAE--------NLAEIYNQAKENDPQLLSVAAQRDAAFEAV 53

Query: 61  PQARAGLLP--NLTGGADINNVRTQIDTPAATANRDAHSWRATLSQPLFRADRWFQLQAA 118
             +R+ LLP  NLT G +IN       +  A    D  S     SQ L++   W  L  A
Sbjct: 54  TSSRSALLPQINLTAGYNINR------SDQAPRESDLLSAGINFSQELYQRSSWVSLDTA 107

Query: 119 EATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNERFDVG 178
           E    QA  Q +AT+Q LIL+ A+ YF VLRAQDNL   +AE+ A  RQL+Q+ +RF+VG
Sbjct: 108 EKKARQADSQYAATQQGLILRVAKAYFEVLRAQDNLEFVRAEKAAVGRQLEQTKQRFEVG 167

Query: 179 LSDKTDVLQSQASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHTLPVLPPLP 238
           LS  TDV  +QA +D   A+ +LA+  + +++EAL  +T ++Y+ +  +           
Sbjct: 168 LSAITDVHDAQAQFDGVLADEVLAENSLTNSYEALREITGQEYSKLAVLDTKRFAASRTT 227

Query: 239 NDAKAWVETAGRQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSN 298
             ++A +E A +QNL+LLA+  +   A + +    +GH P+L     Y  G+N     SN
Sbjct: 228 ESSEALIEKAQQQNLSLLAARISQDVARDNISLASSGHLPSLTLDGGYNYGNN-----SN 282

Query: 299 PNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENT 358
            NA  T    +     IG+ L +P+Y+GG T+S  +++        Q  E   R VV++ 
Sbjct: 283 DNAKNTSGE-EYNDFKIGVNLKVPLYTGGNTTSLTKQAEFAYVAASQDLEAAYRSVVKDV 341

Query: 359 RNLHRAVNTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYN 418
           R  +  +N  +  ++A  Q++IS +SA+EATE G+ VGTR IVDVLD+ R+LY + +N +
Sbjct: 342 RAYNNNINASIGALRAYEQAVISAKSALEATEAGFDVGTRTIVDVLDATRRLYDANKNLS 401

Query: 419 NSRYDYILDNLRLKQAAGTLNPGDLQDLARYLK 451
           N+RYDYIL  L+L+QA GTL+  D+ D+   LK
Sbjct: 402 NARYDYILSVLQLRQAIGTLSEQDVMDVNAGLK 434