Pairwise Alignments

Query, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

Subject, 445 a.a., agglutination protein from Vibrio cholerae E7946 ATCC 55056

 Score = 94.4 bits (233), Expect = 7e-24
 Identities = 104/440 (23%), Positives = 183/440 (41%), Gaps = 29/440 (6%)

Query: 2   LRKLSLALAVSCATNGMVWAAEAPLSANTDLVSVYQEAVDNNADLAAARAQYGAQKEVVP 61
           L+ ++LA+A+S            P+SA T L       + +N +L +A  Q+ +++    
Sbjct: 14  LKAIALAIALS-----------NPVSAQT-LEQAVSITLASNPELKSAFNQFKSREYDAE 61

Query: 62  QARAGLLPNLTGGADINNVRTQIDTPAATANRDAHSWRATLSQPLFRADRWFQLQAAEAT 121
            +    LP +   A I          +   N D     ATL+      D    L   + T
Sbjct: 62  ASSGAYLPKIDLDAGIGYEAINPAESSGNRNTDLTRKDATLTLTQLIWDGSATLNDMDRT 121

Query: 122 NEQAAL---QLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNERFDVG 178
             +A     QL A   N+ L+ A+ Y    +A + L  ++      K       +R D G
Sbjct: 122 AAEAEADRYQLLADASNMALEVAKIYLDATKASEILTLSENNLAIHKDIYRDIKKRADSG 181

Query: 179 LSDKTDVLQSQASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHTLPVLPPLP 238
           +    DV Q +A    A +N + AQ  + D +     L  ++  S++        +PP  
Sbjct: 182 IGSTADVTQVEARLAKAHSNLVAAQNNLFDIYTQFRRLVGQEPVSLEFPRADQNAIPPTL 241

Query: 239 NDAKAWVETAGRQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSN 298
            +A   +  A   +  +  +   V AA    KQ KA + PTL   A  +   NDA G   
Sbjct: 242 ENA---LNMAQENHPVIKVAQADVDAARFQYKQSKAPNYPTLSFEAA-QSWRNDAGGIE- 296

Query: 299 PNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENT 358
                    G  ++ +  LRL   +Y+GG  S +   +  +L +++  RE   R V E  
Sbjct: 297 ---------GSSDELSAMLRLRYNLYNGGSDSDRTESAAYQLNRSKDLREKTFRTVEEGL 347

Query: 359 RNLHRAVNTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYN 418
           R    A++  ++Q Q     + S    V +    YQ+G R ++D+L+++ +L+ + ++Y 
Sbjct: 348 RLSWSALDLTLQQKQFLADHVDSASKTVVSYRKQYQIGQRTLLDLLNTENELFEARKDYL 407

Query: 419 NSRYDYILDNLRLKQAAGTL 438
           ++RY       R+  A+G L
Sbjct: 408 DARYAEQYAKYRVMNASGNL 427