Pairwise Alignments

Query, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

Subject, 419 a.a., TolC family protein from Vibrio cholerae E7946 ATCC 55056

 Score = 95.1 bits (235), Expect = 4e-24
 Identities = 90/414 (21%), Positives = 168/414 (40%), Gaps = 29/414 (7%)

Query: 36  YQEAVDNNADLAAARAQYGAQKEVVPQARAGLLPNLTGGADINNVRTQIDTPAATANRDA 95
           +Q+A   + D   A       ++    A++ LLP+L+G A +N   +Q           +
Sbjct: 29  WQQAKQQSPDAHIAELSVQLSEQDKYLAKSDLLPSLSGSAGMNWSESQ---------NGS 79

Query: 96  HSWRATLSQPLFRADRWFQLQAAEATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLA 155
            S+ AT+ Q L+ + +W  L  A+A    A L+ +     L  Q    YFA+  AQ NL 
Sbjct: 80  SSYGATIEQTLWDSRKWSALDKADADWVLAQLERNQAYNQLAHQLLSAYFALAEAQSNLT 139

Query: 156 STKAEENAFKRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDAFEALIT 215
             + ++    + L  + +R+  G     ++ + + +     +  + AQ ++E     L  
Sbjct: 140 LAQQKQADGAQLLAIAEQRYLAGKIKSVELEELRVNQLDEESTILNAQAELETKRSQLSI 199

Query: 216 LTNRQYNSIQGIVHTLPVLPPLPNDAKA--WVETAGRQNLNLLASNYAVTAAEETLKQRK 273
           L N     +  +    P  P  P  A+   W+  A   +  LL +   V  ++   +Q +
Sbjct: 200 LINASAPQVDEVDTQTPT-PSWPFSAELDDWLTAAKDHSPELLIAIQKVAISQIAKQQSQ 258

Query: 274 AGHAPTLDAVAQYEKGDNDALGFSNPNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQV 333
           +G+ P+L A A Y+ GD     F+                  GL LSIPI   G T S  
Sbjct: 259 SGYYPSLRASAGYQDGDQRNGEFN-----------------AGLTLSIPIDLNGATRSDN 301

Query: 334 RESYSRLGQTEQQREGLRRQVVENTRNLHRAVNTDVEQVQARRQSIISNQSAVEATEIGY 393
            +++      +QQ+  +   + +N R   + V  + +Q+    Q +      + + +  +
Sbjct: 302 EKAHLNWLMAQQQQRKVEIGLHQNLRQQIQQVEIEWQQITMADQQVTHRDKVLRSKQQLF 361

Query: 394 QVGTRNIVDVLDSQRQLYASVRNYNNSRYDYILDNLRLKQAAGTLNPGDLQDLA 447
             G     D++D    L+ +  N  +  Y Y    + L +  G LN   +  L+
Sbjct: 362 DAGLAEASDLIDVHNSLFRAKHNLASRWYSYWRQRIELLKLTGQLNDNAIAQLS 415