Pairwise Alignments

Query, 507 a.a., transcriptional regulator from Pseudomonas simiae WCS417

Subject, 641 a.a., sigma 54-interacting transcriptional regulator from Rhodopseudomonas palustris CGA009

 Score =  259 bits (661), Expect = 3e-73
 Identities = 176/423 (41%), Positives = 241/423 (56%), Gaps = 37/423 (8%)

Query: 101 DGLVDGLHGHLEVHDCMGCPLFVD-------DQPWGLLTLDALDTERFERVELDALQAFA 153
           DG V  + G +  H   G P++V+       D+  G++    +  +  +R E D      
Sbjct: 232 DGAVHTVDGEVFWHKD-GTPVWVEYTSTPIHDRSGGVVGAVVVFRDVNQRHEADE----- 285

Query: 154 SLAAATVNVAERIERLTLRAEIYREASGQQH--KEMIGQSKPHKRLVEEIKLVGGSDLTV 211
            L AA   V    ERL L  +  +E    +   + +IGQS+  +  + ++KLV  +  TV
Sbjct: 286 KLHAALAEVDRLRERLQLENDYLQEEIRIETNPRGIIGQSEAIQTTLRQVKLVAPTAATV 345

Query: 212 LITGETGVGKELVAQAIHAASTRADKPLISLNCAALPETLVESELFGHVRGAFTGALNER 271
           LITGE+G GKEL+A+AIH ASTR D+PLI +NCAA+P  L ESE FGH RGAFTGA+ +R
Sbjct: 346 LITGESGTGKELIARAIHEASTRRDRPLIRVNCAAIPRELFESEFFGHARGAFTGAVRDR 405

Query: 272 RGKFELANGGTLFLDEVGELSLTVQAKLLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDL 331
            G+FELA+GGTLFLDEVGE+ L +Q+KLLRVLQ G  +R+G ++   VDVRLIAATNRDL
Sbjct: 406 IGRFELADGGTLFLDEVGEIPLELQSKLLRVLQEGNFERVGEERTRNVDVRLIAATNRDL 465

Query: 332 ADEVRNGRYRADFYHRLSVYPLQVPALRERGRDVLLLAGFFLEQNRSRMGLGSLRLTSDA 391
             EV+ G +R D Y RLSV+P++   LR+R  D+ LLA  FL  N +R     LRL+   
Sbjct: 466 KREVQRGHFREDLYFRLSVFPIESVPLRDRREDIPLLAQHFL-TNEARELKTELRLSQGD 524

Query: 392 QAALLAYNWPGNVRELEHLIGRSALKALGNCRERPKILSLNAQ-DLDLPD-----VSAPL 445
              L+ Y+WPGNVREL+++I            ER  IL+ N +  LDLP+      SA  
Sbjct: 525 VRRLMRYDWPGNVRELQNVI------------ERATILAQNGRLRLDLPESAGSHASATS 572

Query: 446 IEEQTGSAPVV--TGDLRQATEQYQRQVISACLERHQHNWASAARELGLDRANLGRMAKR 503
             ++  + PVV    DLR          + AC  +   +  +AA  L +    L    K 
Sbjct: 573 GRQKPDARPVVMTVADLRNLERDNIIAALRACKGKVFGDDGAAAM-LDMKPTTLASRIKA 631

Query: 504 LGL 506
           LG+
Sbjct: 632 LGI 634