Pairwise Alignments

Query, 298 a.a., LysR family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 306 a.a., transcriptional regulator GcvA from Vibrio cholerae E7946 ATCC 55056

 Score =  178 bits (452), Expect = 1e-49
 Identities = 110/294 (37%), Positives = 165/294 (56%), Gaps = 12/294 (4%)

Query: 1   MSKRLTPSMTALQCFEAAARHLSFTRAAEELHLTQSAVSKQVAQLEEMLCHNLFERVRQR 60
           MS+RL P + +L+ FEAAARHLSFTRAAEEL +TQ+AVS Q+  LEE L   LF R  + 
Sbjct: 1   MSRRLPP-LNSLKVFEAAARHLSFTRAAEELFVTQAAVSHQIKALEEFLGLKLFRRRNRS 59

Query: 61  LYLSPAGSLYLAEVHKILTQVDISSRYILTYGGETEVLRIATQPTFGDRWLVPKLKDFAA 120
           L L+  G  Y  ++  I + +  ++  +L    E   L I+  P+F  +WLVP+L DF  
Sbjct: 60  LLLTEEGQSYFLDIKDIFSSLAEATDKLLE-RSEKGALTISLPPSFAIQWLVPRLADFNQ 118

Query: 121 LHPNIHLDVRNELEPFD--VLQAKADIAFFFGQGSWPGATCIELFREAVVPVCAPGFV-- 176
             P+I  DVR +    D   L    D+A ++G+GSWPG    +L++E ++P+C+P  +  
Sbjct: 119 QEPDI--DVRIKAVDMDEGSLTDDVDVAIYYGRGSWPGLRADKLYQEFLIPLCSPALLLG 176

Query: 177 ---AEGSHASSRHTLLQCTSRPEAWHEWFLEQGLHSQNSYHGPRFDTFYMCIRAAQSGYG 233
               E     + HTLL  TSR + W ++  E GL + N  HGP F    M ++AA  G G
Sbjct: 177 NKPMEKLSDLAYHTLLHDTSRKD-WKQFAKENGLDNVNVNHGPIFSHSTMVLQAAAHGQG 235

Query: 234 VALVPQYLVADELAQGSLMIPWDYAMPSSGAHFIAHAEHAGEIPKVKAFLNWMV 287
           VAL    L   E+  G L+ P+D  + ++ A ++   E   ++ ++  F +WM+
Sbjct: 236 VALGNNVLAQPEIDAGRLIAPFDEVLMTNNAFYVVCHEKQADMGRIATFRDWML 289