Pairwise Alignments

Query, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

Subject, 388 a.a., preprotein translocase subunit SecD from Methanococcus maripaludis S2

 Score = 69.3 bits (168), Expect = 3e-16
 Identities = 86/398 (21%), Positives = 165/398 (41%), Gaps = 75/398 (18%)

Query: 208 DLNGQAVLRLAMSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPG 267
           DL+G + + L  + ++++E    ++ + LT+   R+N  G+++  +  +G++ IV+E+P 
Sbjct: 33  DLSGGSTIVL-QTESELSESEMTTVNEILTS---RLNTNGLSDVRIYPRGSDEIVIEIPE 88

Query: 268 VQDTAEAKRILGKTANLEFRLAAEPGATRATAEEFEFREGNRPPALIERGLIITGDQVTD 327
             D    ++IL +                               A+I+     TG  V+ 
Sbjct: 89  SADLERIQKILTQQGVFT--------------------------AVIDNQTAYTGQDVSY 122

Query: 328 AKAGFGEHGTPEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPITTYTKQMVNGVEK 387
            +         E  +   G+G           VG  + +   ++     Y K        
Sbjct: 123 VE---------EPGMTASGYG-----------VGFKLTLDGAQKFADVAYGKG------- 155

Query: 388 DVPVQTFKEEKKIIS------LATIQSPLGAQFRITGLNGQGESSELALL----LRAGGL 437
             PV+ + +EK I +      LA           + G N   E  + A +    L++G L
Sbjct: 156 GYPVELYMDEKAISAPLLSADLADGNIHQNQVITVAGSNPTEEDIDEAWVIYTALKSGSL 215

Query: 438 AAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIYRFFGVIATVALAG--NM 495
              ++     ++ P+LG++ I   V A ++  + V+  I   Y+   ++  + + G   +
Sbjct: 216 PVKVHIEYISSVSPTLGSEFIKGSVIAGIFAFIAVAAVISFRYKNPKIVLPILITGFSEV 275

Query: 496 VMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGR 555
           +++L   SL+   L L  IAGI+  +G  VD  ++I     +E  +G    + + +   R
Sbjct: 276 LLILGFASLIDWKLDLASIAGIIAAVGTGVDHQIVI----TDETISGEA--KKVTKSIKR 329

Query: 556 AFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGI 593
           AF  I  +  TT+     LF MG G +KGFA+T   G+
Sbjct: 330 AFFIIFGAAATTIAAMLPLFVMGIGMLKGFAITTIAGV 367