Pairwise Alignments

Query, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

Subject, 532 a.a., protein-export membrane protein SecD (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  301 bits (772), Expect = 4e-86
 Identities = 188/507 (37%), Positives = 283/507 (55%), Gaps = 50/507 (9%)

Query: 124 MKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKER---LRYRSLPQLNGAIQL 180
           + LGLDL GG+H  L VD+DKA++  L     D++S  R++    LR R LP     ++ 
Sbjct: 44  ISLGLDLMGGIHLTLGVDVDKAVENSLSQMGQDIRSSAREKDIFILRPRILP--GDRVEF 101

Query: 181 GFSDEASREQARALIRKNFNDFDI-VPADLNGQAVLRLA-MSPAKIAEIREYSIKQNLTT 238
             +  A R+Q   ++ K F    +  P +++G  +  +A +   +   I + ++ Q + T
Sbjct: 102 VLAKAAQRDQLGEMLAKQFPQLAVGAPVEIDGGQLRYVATLKKEQRTHIEDMALDQAVKT 161

Query: 239 VRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRLAAEPGATRAT 298
           +RNR+++ GVAEP +++Q  +RI V+LPG+ D A A +I+GKTA+LEFR+  +       
Sbjct: 162 IRNRIDQFGVAEPDIRKQQDHRIQVQLPGLADPARAIQIIGKTAHLEFRIVRDDVDPEKL 221

Query: 299 AEEFE---------FREGN-----RPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRL 344
           A+             R G        P  +++ +++TG+ V DA+ GF +     V +  
Sbjct: 222 AKGLVPPGVDVLPMMRRGGDGSAGEVPVALDKEILLTGENVADARPGFDQFNQAYVMLTF 281

Query: 345 DGHGGELMSRATRSNVGRSMAVIFIEQRPITTYTKQMVNGVEKDVPVQTFKEEKKIISLA 404
           +  G  +  R T  NV + +A++                             + K+ S  
Sbjct: 282 NSRGAAIFERVTGENVRKRLAIVL----------------------------DGKVYSAP 313

Query: 405 TIQSPL-GAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVD 463
           +IQ  + G +  ITG     E+ +LA++LRAG L AP+   EERT+GPSLG ++I  G+ 
Sbjct: 314 SIQEKIAGGRASITGHFTTEEAQDLAIVLRAGSLPAPVNVLEERTVGPSLGQESIDSGIL 373

Query: 464 AALWGMLFVSLFIIAIYRFFGVIATVALAGNMVMLLALMSLLGATLTLPGIAGIVLTMGM 523
           A   G   V +F I  Y   G IA   L   ++++LA M+  GATLTLPG+AGI LT+GM
Sbjct: 374 AGQVGGAAVVVFTILYYGASGAIAVGMLCFTILLILAGMAGFGATLTLPGLAGIALTIGM 433

Query: 524 AVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVK 583
            VDANVLI+ RIREE+  G+T   AI+ GF RA  +I DSNLTT++   IL+  GTGPV+
Sbjct: 434 GVDANVLIYERIREELRRGLTPLAAIHAGFDRAMLSITDSNLTTVIAAAILYQFGTGPVR 493

Query: 584 GFAVTMSLGIFTSMFTAIMVTRAMVNL 610
           GFAVT++LGI  SMFTAI V+RA+ +L
Sbjct: 494 GFAVTLTLGILASMFTAIFVSRAVFDL 520