Pairwise Alignments

Query, 304 a.a., preprotein translocase subunit SecF from Pseudomonas simiae WCS417

Subject, 622 a.a., Protein-export membrane protein SecD (TC 3.A.5.1.1) from Xanthomonas campestris pv. campestris strain 8004

 Score = 60.8 bits (146), Expect = 8e-14
 Identities = 36/166 (21%), Positives = 85/166 (51%), Gaps = 7/166 (4%)

Query: 118 VGPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVIVTVGILAYFQI 177
           +GP +G E  ++G   ++ + V  +++    ++  FG    V+L+ ++++ + +++ F  
Sbjct: 448 IGPSLGAENVERGVTAVVFSFVFTLVFFTVYYRM-FGAITSVALLFNLLIVIAVMSLFGA 506

Query: 178 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFR--VLRKATLIENINISTTQTLLRTMAT 235
           T  L   A +   +G S++  +++ +R+RE  R  V  K+ ++     +    L      
Sbjct: 507 TMTLPGFAGLALSVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTIL----DA 562

Query: 236 SISTLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLI 281
           +++ L+   AL  FG   L GF+L + IG+ A  +++I ++  + +
Sbjct: 563 NLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRALAV 608