Pairwise Alignments

Query, 252 a.a., pilus assembly protein PilW from Pseudomonas simiae WCS417

Subject, 174 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 52.8 bits (125), Expect = 5e-12
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 16/168 (9%)

Query: 5   LALLLLVTGLAAGCVSSGHESPLQTGKGREEARVAYVQLGLGYLQQGMSEHAKVPLKKAL 64
           L  L+L++   AGC    +       K +E A + +  +G+       ++ A    +KA+
Sbjct: 6   LIFLILMSTCFAGCFEQNNLE-----KSQEMAEIGFAYIGID------NDKAIEYYEKAI 54

Query: 65  ELDSDDPDANGALALVFQAQAEPELAEQYFHKALAARPADPRLLNNYGSFLFEQTRYDQA 124
           +L+ DD +A   L  ++  + + E A +Y  KAL   P +P +  N G  L+     D  
Sbjct: 55  KLNPDDANAISFLGTLYDGEGDREKAYEYLTKALEMEPKNPWMYYNLG--LYYLNHDDNM 112

Query: 125 AL-YFQQASTDTLYPERSRVFENLGVTSMRLGQRDSARQHLEKALHLN 171
           A+  F++A    + PE    +  LG T   +G   +++ + EKA  +N
Sbjct: 113 AIGCFEKAL--RIDPENECCWSQLGYTYYDIGDYTNSKLNFEKAYEIN 158



 Score = 26.9 bits (58), Expect = 3e-04
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 122 DQAALYFQQASTDTLYPERSRVFENLGVTSMRLGQRDSARQHLEKALHLNGRQP 175
           D+A  Y+++A    L P+ +     LG      G R+ A ++L KAL +  + P
Sbjct: 44  DKAIEYYEKAIK--LNPDDANAISFLGTLYDGEGDREKAYEYLTKALEMEPKNP 95