Pairwise Alignments

Query, 252 a.a., pilus assembly protein PilW from Pseudomonas simiae WCS417

Subject, 409 a.a., tetratricopeptide repeat protein from Methanococcus maripaludis S2

 Score = 43.1 bits (100), Expect = 9e-09
 Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 2/121 (1%)

Query: 51  GMSEHAKVPLKKALELDSDDPDANGALALVFQAQAEPELAEQYFHKALAARPADPRLLNN 110
           G  E A +  KKA+ELDS +P     L L +    E   + Q + KA+   P D    +N
Sbjct: 276 GEYEKAVLNYKKAIELDSKNPIFWSGLGLSYNYLNEYNSSIQSYEKAVELNPEDDISWSN 335

Query: 111 YGSFLFEQTRYDQAALYFQQASTDTLYPERSRVFENLGVTSMRLGQRDSARQHLEKALHL 170
            G   ++   Y+++  YF+++    L       +  LG + + L   + A    +KA+ +
Sbjct: 336 LGYLQYKNKNYNESISYFEKSL--DLNSNNKYAWNGLGNSYLLLKNYEKALMCYDKAIEI 393

Query: 171 N 171
           +
Sbjct: 394 D 394



 Score = 37.7 bits (86), Expect = 4e-07
 Identities = 46/199 (23%), Positives = 79/199 (39%), Gaps = 11/199 (5%)

Query: 35  EARVAYVQLGLG-YLQQGMSEHAKVPLKKALELDSDDPDANGALALVFQAQAEPELAEQY 93
           E+   Y ++G   YL++      K    KALELD D+  +   L          ++AE Y
Sbjct: 22  ESSSTYAEMGEQCYLEKDYETSVKC-FDKALELDPDNTCSLEYLGKYSMENRNLDMAEIY 80

Query: 94  FHKALAARPADPRLLNNYGSFLFEQTRYDQAALYFQQASTDTLYPERSRVFENLGVTSMR 153
           F + +   P +   L + G     Q  YD+A  Y+ +     +     + +   G+    
Sbjct: 81  FGRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKLL--EIDNSVGKTWFYKGICLKM 138

Query: 154 LGQRDSARQHLEKALHLNGRQPRALLEMAELS---YEDRHYVPARDYYERFSLLSGQNAR 210
           LG  D + +  +K+    G      L   +L    Y++  Y  A   +++   L G N +
Sbjct: 139 LGNYDESVEAFDKS---TGDYETLFLTWNDLGYCYYQNGEYDKAIGCFDKALTLDG-NLK 194

Query: 211 SLLLGVRLATVHEERDTAA 229
             L G  L    +E+ T A
Sbjct: 195 YSLNGKGLCCEKKEQYTMA 213



 Score = 36.2 bits (82), Expect = 1e-06
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 2/115 (1%)

Query: 94  FHKALAARPADPRLLNNYGSFLFEQTRYDQAALYFQQASTDTLYPERSRVFENLGVTSMR 153
           F KAL    ++P         L     Y++A L +++A    L  +    +  LG++   
Sbjct: 251 FEKALDLNNSNPYCYFYKADSLNRLGEYEKAVLNYKKAIE--LDSKNPIFWSGLGLSYNY 308

Query: 154 LGQRDSARQHLEKALHLNGRQPRALLEMAELSYEDRHYVPARDYYERFSLLSGQN 208
           L + +S+ Q  EKA+ LN     +   +  L Y++++Y  +  Y+E+   L+  N
Sbjct: 309 LNEYNSSIQSYEKAVELNPEDDISWSNLGYLQYKNKNYNESISYFEKSLDLNSNN 363



 Score = 23.9 bits (50), Expect = 0.006
 Identities = 22/97 (22%), Positives = 41/97 (42%)

Query: 139 ERSRVFENLGVTSMRLGQRDSARQHLEKALHLNGRQPRALLEMAELSYEDRHYVPARDYY 198
           E S  +  +G         +++ +  +KAL L+     +L  + + S E+R+   A  Y+
Sbjct: 22  ESSSTYAEMGEQCYLEKDYETSVKCFDKALELDPDNTCSLEYLGKYSMENRNLDMAEIYF 81

Query: 199 ERFSLLSGQNARSLLLGVRLATVHEERDTAARFGQQL 235
            R   L  +N  +L     +    EE D A  +  +L
Sbjct: 82  GRLIELEPENKCALKSLGEIHLSQEEYDKALYYYNKL 118