Pairwise Alignments

Query, 252 a.a., pilus assembly protein PilW from Pseudomonas simiae WCS417

Subject, 792 a.a., TPR/GGDEF domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 55.1 bits (131), Expect = 4e-12
 Identities = 47/142 (33%), Positives = 61/142 (42%), Gaps = 4/142 (2%)

Query: 45  LGYLQQGMSEH--AKVPLKKALELDSDDPDANGALALVFQAQAEPELAEQYFHKALAARP 102
           LG    G+  H  A+   ++AL+    DP A   L  V Q+  E   A + + K L   P
Sbjct: 598 LGVCMAGLGRHGEARRYFEQALQRKPGDPMALYNLGTVCQSLGETAEARKQYRKCLKYAP 657

Query: 103 ADPRLLNNYGSFLFEQTRYDQAALYFQQASTDTLYPERSRVFENLGVTSMRLGQRDSARQ 162
                L   G     + RY QA  YF +A+          V  NL   SMR G+ D AR+
Sbjct: 658 GHVFALVRLGQLAEGEKRYAQARQYFNKAA--RAGDSGGLVHRNLARLSMRQGRPDEARE 715

Query: 163 HLEKALHLNGRQPRALLEMAEL 184
           HL  AL  N +   AL  MA L
Sbjct: 716 HLHDALLRNPQDAVALQLMARL 737



 Score = 44.7 bits (104), Expect = 6e-09
 Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 7/161 (4%)

Query: 45  LGYLQQGMSEHAKVPLKKALELDSDDPDANGALALVFQAQAEPELAEQY-----FHKALA 99
           L Y +    E+A   L+ AL L         +LAL   A     L + +     +  AL 
Sbjct: 527 LAYRRADALENALKALEYALLLPEPRVGIFDSLALNISADKRFSLGDTFGAIEEYKTALL 586

Query: 100 ARPADPRLLNNYGSFLFEQTRYDQAALYFQQASTDTLYPERSRVFENLGVTSMRLGQRDS 159
           A   +    N+ G  +    R+ +A  YF+QA      P       NLG     LG+   
Sbjct: 587 ADEGNTMAWNSLGVCMAGLGRHGEARRYFEQALQRK--PGDPMALYNLGTVCQSLGETAE 644

Query: 160 ARQHLEKALHLNGRQPRALLEMAELSYEDRHYVPARDYYER 200
           AR+   K L        AL+ + +L+  ++ Y  AR Y+ +
Sbjct: 645 ARKQYRKCLKYAPGHVFALVRLGQLAEGEKRYAQARQYFNK 685



 Score = 34.3 bits (77), Expect = 8e-06
 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 61  KKALELDSDDPDANGALALVFQAQAEPELAEQYFHKALAARPADPRLLNNYGSFLFEQTR 120
           K AL  D  +  A  +L +          A +YF +AL  +P DP  L N G+       
Sbjct: 582 KTALLADEGNTMAWNSLGVCMAGLGRHGEARRYFEQALQRKPGDPMALYNLGTVCQSLGE 641

Query: 121 YDQAALYFQQASTDTLYPERSRVFENLGVTSMRLGQRD--SARQHLEKALHLNGRQPRAL 178
             +A   +++     L      VF  + +  +  G++    ARQ+  KA           
Sbjct: 642 TAEARKQYRKC----LKYAPGHVFALVRLGQLAEGEKRYAQARQYFNKAARAGDSGGLVH 697

Query: 179 LEMAELSYEDRHYVPARDYYERFSLLSGQNARSLLLGVRL 218
             +A LS        AR++     L + Q+A +L L  RL
Sbjct: 698 RNLARLSMRQGRPDEAREHLHDALLRNPQDAVALQLMARL 737