Pairwise Alignments

Query, 601 a.a., lipid transporter ATP-binding/permease from Pseudomonas simiae WCS417

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  473 bits (1218), Expect = e-138
 Identities = 251/581 (43%), Positives = 382/581 (65%), Gaps = 15/581 (2%)

Query: 11  SSLKIYFRLLSYVRPYAGLFALSILGFLIFASTQPMLGYILKYFVD-GLSNPEAVLFPSV 69
           S+ + + RL +Y+R Y     +S +  +I A+    +  +LK  +D G  N E+      
Sbjct: 8   SNWQTFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES------ 61

Query: 70  PFLRDLQLLQAVPLLIILIAAWQGLGSFLGNYLLAKVSLGLVHDLRVQLFNNLLTLPNRY 129
                   L+ +P +I+ +   +GL  F  +Y L+ VS  +V  +R +LFN+ + +P R+
Sbjct: 62  ------NFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRF 115

Query: 130 FDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGMTVIFLFASLLFMNWRLTLVMIAIL 189
           FD  ++G L+SRIT++   V GA + A+  ++REG ++I L   + + +W+L+LV+I + 
Sbjct: 116 FDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVA 175

Query: 190 PLIAVMVSTASKKFRKQSKKIQVAMGDVTHVASETIQGYRVVRSFGGEVYEEKRFLKASQ 249
           P++A  +S  SK+FRK S+ +Q AMG VT  A + ++G++VV S+GG+  E KRF K S 
Sbjct: 176 PVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSN 235

Query: 250 SNTNKQLRMTRTGAIYTPALQLVIYTAMAVLMFL--VLYLRGDASAGDMVAYITLAGLLP 307
           S   + +++    +I  P +Q++   A+  ++FL  V  +R + + G      +    L 
Sbjct: 236 SMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLM 295

Query: 308 KPIRQLSEVSSTIQKGVAGAESIFEQLDEEVEVDRGTIERDKVSGRLDVRNLNFTYPGTE 367
           +P++ L+ V+S  Q+G+A  +++F  +D E E D G  E ++V+G +DV+++ FTY G E
Sbjct: 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKE 355

Query: 368 RHVLKDISFTAEPGQMIALVGRSGSGKSTLASLIPRFYHHESGEILLDGIEIENYKLLNL 427
           +  L  +SF+   G+ +ALVGRSGSGKST+A+L  RFY  +SG I LDG ++ +YKL NL
Sbjct: 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNL 415

Query: 428 RKHIAQVTQHVTLFSDTVTNNIAYGDLAGAPRAEVEAAAADANAKDFIDQLPKGFDTQVG 487
           R+H A V+Q+V LF+DT+ NNIAY       R ++E AA  A+A +FI+ +P+G DT +G
Sbjct: 416 RRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIG 475

Query: 488 ENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMQGRTTLVI 547
           ENG  LSGGQRQR+AIARALL++AP+LILDEATSALDTESER IQAALD++ + +T LVI
Sbjct: 476 ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVI 535

Query: 548 AHRLSTIEKADLILVMDDGRIVERGTHGELLAQNGYYARLH 588
           AHRLSTIE+AD ILV+D+G I+ERG H +LLAQ+G YA+LH
Sbjct: 536 AHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLH 576