Pairwise Alignments

Query, 601 a.a., lipid transporter ATP-binding/permease from Pseudomonas simiae WCS417

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  462 bits (1190), Expect = e-134
 Identities = 253/606 (41%), Positives = 378/606 (62%), Gaps = 22/606 (3%)

Query: 1   MTDSSPSASPSSLKIYFRLLSYVRPYAGLFALSILGFLIFASTQPMLGYILKYFVDGLSN 60
           MT+SS S   S   ++ RLL+Y+ P  G+  LS+ G +++        Y +K F+D    
Sbjct: 1   MTNSSKSEVGS---VFLRLLTYLVPLKGVLFLSVFGLVLYGLVDATFIYSIKPFID---Q 54

Query: 61  PEAVLFPSVP-------------FLRDLQLLQAVPLLIILIAAWQGLGSFLGNYLLAKVS 107
             A   P+ P             F  D  +L+  P ++I +   +GL +FL  Y ++ +S
Sbjct: 55  GFASNVPTTPGLVEGVDLGMGGGFNSDSDVLKTAPFVVIGLFTLRGLANFLSTYGISYIS 114

Query: 108 LGLVHDLRVQLFNNLLTLPNRYFDNHNSGHLISRITFNVTMVTGAATDAIKVVIREGMTV 167
             ++ D+R Q+F + L LP  Y D  +SG+LISR+TF+   +  A+  A+  ++R+G+TV
Sbjct: 115 ARMIMDMRQQVFEHYLRLPVSYIDAESSGNLISRVTFDTEQIARASGSALITIVRDGITV 174

Query: 168 IFLFASLLFMNWRLTLVMIAILPLIAVMVSTASKKFRKQSKKIQVAMGDVTHVASETIQG 227
           I +   + + +W+L+L ++ + PLI ++++  S+KFRK SK+IQ AMG VT V  + I+G
Sbjct: 175 IGMLGVMFYNSWKLSLCILIVGPLIGLVIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKG 234

Query: 228 YRVVRSFGGEVYEEKRFLKASQSNTNKQLRMTRTGAIYTPALQLVIYTAMAVLMFL--VL 285
           ++ V  FGG+  E +RF K +  N ++ +++    AI  P + ++   A+A +++   + 
Sbjct: 235 HKNVLVFGGQQAESQRFAKVNDDNRSRTMKLALAQAISQPLVMVIGSLALAFVLYASSLE 294

Query: 286 YLRGDASAGDMVAYITLAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDEEVEVDRGTI 345
            +R D +AG     +     + +PI+ L+ V++  Q+G+A   +IF  LD   EVD GT 
Sbjct: 295 SMRADLTAGTFATILAAMLAMLQPIKSLTRVNAEFQRGIAACSTIFAVLDTPAEVDNGTF 354

Query: 346 ERDKVSGRLDVRNLNFTYPGTERHVLKDISFTAEPGQMIALVGRSGSGKSTLASLIPRFY 405
           E  +V GRL    +NF Y   E   LK++ F   PG+ +ALVGRSGSGKST+ASLI RFY
Sbjct: 355 ETKRVEGRLSFDKVNFRYNNQEGLALKEVDFQVNPGETLALVGRSGSGKSTIASLITRFY 414

Query: 406 HH-ESGEILLDGIEIENYKLLNLRKHIAQVTQHVTLFSDTVTNNIAYGDLAGAPRAEVEA 464
              +SG+I LD + + +YKL  LR+ +A V+Q VTL +DT+  NIAY         ++  
Sbjct: 415 SDLDSGDIRLDDVSLRDYKLAALRRQVALVSQQVTLINDTIAANIAYAYPGEVTEEQIID 474

Query: 465 AAADANAKDFIDQLPKGFDTQVGENGVLLSGGQRQRLAIARALLKNAPLLILDEATSALD 524
           AA  ANA +FI  +P+G  TQVGENGV+LSGGQRQR+AIARA+L++AP+LILDEATSALD
Sbjct: 475 AAKLANAWEFICNMPEGIYTQVGENGVMLSGGQRQRIAIARAILRDAPILILDEATSALD 534

Query: 525 TESERHIQAALDKVMQGRTTLVIAHRLSTIEKADLILVMDDGRIVERGTHGELLAQNGYY 584
           TESE+ IQ  LD + Q RT++VIAHRLST+E A+ ILV+D G++VERGTH ELLA+ G Y
Sbjct: 535 TESEKAIQTGLDNLRQNRTSIVIAHRLSTVENANQILVVDQGKVVERGTHSELLAKQGIY 594

Query: 585 ARLHAM 590
             L+ M
Sbjct: 595 YNLYQM 600