Pairwise Alignments

Query, 480 a.a., trehalose PTS system, EII-BC components TreB (from data) from Pseudomonas simiae WCS417

Subject, 478 a.a., PTS trehalose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

 Score =  363 bits (931), Expect = e-105
 Identities = 199/471 (42%), Positives = 287/471 (60%), Gaps = 17/471 (3%)

Query: 1   MSHDYSTIARE----ILENLGGSDNLEQAAHCVTRLRLALKDPSLVNSSALNQVDLVKGS 56
           M  D S IA++    ++E +GG  N+    HC+TRLR  L  P   + + L  + +VKG 
Sbjct: 1   MDEDMSKIAKQDVTRLIELVGGESNIASVTHCLTRLRFVLNQPEQADKAGLEALSMVKGC 60

Query: 57  FFTGGLFQVVIGPGEVEKVYAALREQTGLAAATIADVKKKGADKTNAMQRLVRVFSDVFM 116
           F   G FQVVIG  EV++VY  L EQTG  A +  D K       N ++R +   +++F+
Sbjct: 61  FTNAGQFQVVIGT-EVDQVYKMLLEQTGKQAVSKDDAKVAARQNMNVLERGISHLAEIFV 119

Query: 117 PILPALIIAGLLMGVNNLMGAQGMFIEGKTLLEAYPNLDGLWSLINLMANTSFVFLPALV 176
           P+LPA+I  GL++G  N++G   MF +GKTL E       + + + L+    F FLP  V
Sbjct: 120 PLLPAIITGGLILGFRNVIGDIRMF-DGKTLTEISQFWASVHAFLWLIGEAIFFFLPVGV 178

Query: 177 GWSAAKRFGGSEILGIVLGLMLVHPDLLNAWNYGKAVAGLDGQSLPYFDIFGWFKIEKVG 236
            WS  K+ GG+ ILGI LG+ LV P L+NA+  GK V        P    FG F IEKVG
Sbjct: 179 CWSTVKKLGGTPILGITLGVTLVSPQLMNAYLIGKEV--------PEVWDFGLFAIEKVG 230

Query: 237 YQGQILPILMAAYVMSVIEKGLRARVPNAIQLLVVPITTIVVTGVLALAIIGPVTRHLG- 295
           YQ Q++P ++A   ++ IE  LR  VP+ + L+VVP  +I+V+ VLA A IGP  R +G 
Sbjct: 231 YQAQVIPAILAGVALAFIENNLRRVVPSYLYLVVVPFVSIIVSVVLAHAFIGPFGRVIGD 290

Query: 296 -ILITEGVVTLFDLAPMVGGAIFGLLYAPLVITGMHHMFLAVDLQLISTQGGTFIWPMIV 354
            +          D A ++G  +FG +YAPLVITG+HH   AVDLQL+   GGT IWP+I 
Sbjct: 291 GVAFAAKAAMTGDFA-VIGSTLFGFMYAPLVITGIHHTTNAVDLQLMQELGGTPIWPLIA 349

Query: 355 MSNLAQGSAALAVFYTTRNARDKSMASTSAISAYFGITEPAMFGVNLRFKFPFYAALVGS 414
           +SN+AQ SA + +   ++   ++ ++  +AISAY G+TEPAM+G+NL++KFP  +A++GS
Sbjct: 350 LSNIAQASAVVGIIIISKKQGERDISVPAAISAYLGVTEPAMYGINLKYKFPMLSAMIGS 409

Query: 415 ALGSIFLALNKVQASAIGVGGLPGFISIVPQSIAVFVIGMVIAMVVPFVLT 465
           AL +       V A+ IGVGGLPG +SI PQ  +++++ M+IA++VP  LT
Sbjct: 410 ALAAAVCGSAGVMANGIGVGGLPGILSIQPQFWSIYLVAMLIAILVPAALT 460