Pairwise Alignments

Query, 568 a.a., PTS N-acetyl-D-glucosamine transporter from Pseudomonas simiae WCS417

Subject, 523 a.a., PTS N-acetylmuramic acid transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

 Score =  430 bits (1105), Expect = e-125
 Identities = 234/507 (46%), Positives = 305/507 (60%), Gaps = 56/507 (11%)

Query: 10  QRLGRALMLPIAILPIAGLLLRLGDTDLLNIAVMHDAGQAIFANLALIFAIGIAVGFARD 69
           Q+LG+ALMLPIA LP+A LLLRLG  DLL I  M  AG AIF+ L L+F +GIA+G ++D
Sbjct: 8   QKLGKALMLPIATLPVAALLLRLGQPDLLGIPFMAAAGDAIFSQLPLLFGLGIAIGLSKD 67

Query: 70  NNGTAGLAGAIGYLVMVSTLKVMDTSINMGMLAGIASGLMAGGLYNRFKDIKLPEYLAFF 129
            +G AGLAGA+ Y V+ +T K +D SINM    GI +G++AG  YN F   +LPE+LAFF
Sbjct: 68  GSGAAGLAGAVAYFVLSATAKTIDASINMSFFGGIFAGIIAGHSYNAFHTTRLPEWLAFF 127

Query: 130 GGRRFVPIVTGFSAVGLGVIFGLIWPPIQHGINSFGVLLMESGSLGAFVFGVFNRLLIVT 189
            G+R VPI+ G  A+  G + G+IWP IQ G+++    +  SG+LG FV+G  NR LI  
Sbjct: 128 AGKRLVPIMAGLFALVAGALSGVIWPSIQGGLDALAHAVSTSGALGQFVYGTLNRALIPV 187

Query: 190 GLHHILNNMAWFVFGSF----------------------TDP------------------ 209
           GLHH+LN+  WF  G+                        DP                  
Sbjct: 188 GLHHVLNSYFWFGMGTCQEILVSGAQAAGQALPALEKLCVDPALAKTLVVGQEHTFAFKN 247

Query: 210 ------------VTGAVVTGDLTRYFAGDPKGGQFMTGMFPVMLFGLPAACLAMYRNALP 257
                       VT  V +GDL R+F GD   G FM G FPVM+FGLP A LAMY  A  
Sbjct: 248 AVTPEITAVVKEVTEVVKSGDLHRFFGGDKSAGVFMNGFFPVMMFGLPGAALAMYLAAPA 307

Query: 258 ERRKVMGGIFLSMALTSFLTGVTEPIEFAFMFLAPFLYLIHAVLTGLSMAVTNMLNIHLG 317
           ERR  +GG   S+A  SFLTG+TEP+EF F+FLAP LY +HAV TGLS+ V NM     G
Sbjct: 308 ERRHQVGGALFSVAFCSFLTGITEPLEFMFVFLAPALYAMHAVFTGLSLVVANMFGTLHG 367

Query: 318 FTFSGGFIDMVLGWGKSTNGWLVFPVGLAYALIYYSVFNYCIRHFNLKTPGREDTQVVQA 377
           F FS G ID +L WG +T    +F +GLA+  +Y+  F + IR FNLK+PGRED +V   
Sbjct: 368 FGFSAGLIDFLLNWGLATKPATLFVIGLAFFALYFFTFTFAIRAFNLKSPGREDEEVETE 427

Query: 378 EAMSDNQR---ATAYIQALGGAQNLLSVGACTTRLRLDMVDRNKAVDAELKALGAMAVVR 434
              +D  +   A  Y++ALGG +NL S+ AC TRLRL + DR+ A +A LK LGA  VV+
Sbjct: 428 TDSADASKGDLARQYLKALGGHENLTSIDACITRLRLTLKDRSVADEAVLKKLGAKGVVK 487

Query: 435 PGNGGSLQVVVGPMADSIADEIRLAMP 461
            G   +LQV++GP+A+ +A E++   P
Sbjct: 488 LGE-NNLQVILGPLAEIVAGEMKAISP 513



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 485 AEKWLNALGGRGNVRQLEAVAMTRLRVELGDDSGLSEADLTALGCQGVSQLESGVWHLLI 544
           A ++L ALGG  N+  ++A  +TRLR+ L D S   EA L  LG +GV +L      +++
Sbjct: 439 ARQYLKALGGHENLTSIDA-CITRLRLTLKDRSVADEAVLKKLGAKGVVKLGENNLQVIL 497

Query: 545 GDKA 548
           G  A
Sbjct: 498 GPLA 501