Pairwise Alignments

Query, 458 a.a., RNA-binding protein from Pseudomonas simiae WCS417

Subject, 334 a.a., signal recognition particle-docking protein FtsY from Dechlorosoma suillum PS

 Score =  145 bits (365), Expect = 3e-39
 Identities = 100/303 (33%), Positives = 152/303 (50%), Gaps = 15/303 (4%)

Query: 3   ENLTDRLSQTLRHVTGKAKLTEDNIK---DTLREVRMALLEADVALPVVKDFVNSVKERA 59
           E L   LS+T   + GK K      K   + L E+   LL +DV +      ++ +K RA
Sbjct: 37  ERLFAGLSRTRSQLGGKLKSVFARGKVDDELLEELETLLLTSDVGMDATMHLLDELKRRA 96

Query: 60  VGTEVSRSLTPGQAFVKIVQAELESLMGAANEDLNLSAVPPAVVLMAGLQGAGKTTTAGK 119
              ++  +    QA        L  ++      L + +  P V+++AG+ GAGKTT+ GK
Sbjct: 97  KQDKLEGAAAIQQALADT----LAQMLAPLEAPLQVDSHKPFVIMIAGVNGAGKTTSIGK 152

Query: 120 LARFLKERKKKSVMVVSADVYRPAAIKQLEMLAGEVGVTFFPSDLSQKPVDIANAAIKEA 179
           LA++ + + K SV++ + D +R AA +QL        VT    + S  P  +   AI  A
Sbjct: 153 LAKYFQSQGK-SVLLAAGDTFRAAAREQLMTWGERNNVTVIAQE-SGDPAAVVFDAIAAA 210

Query: 180 KLKFIDVVIVDTAGRLHIDEEMMGEIKALHAAIN------PVETLFVVDAMTGQDAANTA 233
           K + IDVV+ DTAGRL     +M EI  +   I       P E + V+DA  GQ+A    
Sbjct: 211 KARGIDVVLADTAGRLPTQLHLMEEIAKVRRVIQKADPTGPHEVMLVLDANIGQNALAQV 270

Query: 234 KAFGDALPLTGVILTKVDGDARGGAALSVRAITGKPIKFIGMGEKSDALEPFHPERIASR 293
           KAF  ++ +TG++LTK+DG A+GG   ++     KP++FIG+GE  D L PF        
Sbjct: 271 KAFDKSINVTGLVLTKLDGTAKGGVIAAIARQCPKPVRFIGVGEGIDDLRPFVARDFVDA 330

Query: 294 ILG 296
           + G
Sbjct: 331 LFG 333