Pairwise Alignments

Query, 178 a.a., 16S rRNA processing protein RimM from Pseudomonas simiae WCS417

Subject, 184 a.a., ribosome maturation factor RimM from Vibrio cholerae E7946 ATCC 55056

 Score =  123 bits (309), Expect = 2e-33
 Identities = 63/177 (35%), Positives = 108/177 (61%), Gaps = 2/177 (1%)

Query: 4   TPAVADDLIVIGKIYSVHGVRGEVKVYSFTDPTENLLQYKTWTLKREGSVKQVELVSGRG 63
           T +  ++ +V+GK+ S +G+RG +KV+S+TD  E++  Y  W + ++G   + ++   + 
Sbjct: 8   TMSKQNEKLVVGKLGSSYGIRGWLKVFSYTDNPESIFDYSPWYIDQKGEWVEYKVEGWKR 67

Query: 64  SDKFLVAKLKGLDDREEARLLAGYEICVPRNLFPELTDGEYYWYQLEGLKVIDQLGQLFG 123
            +K  V KL+GLD RE+A LL  +EI +     PEL++ E+YW +L G++V+   G   G
Sbjct: 68  HNKGWVVKLQGLDVREDAHLLTNFEIAIDPASLPELSEDEFYWRELFGMQVVTTNGYDLG 127

Query: 124 KIDHLLETGANDVMVVKP-CAGSLDDRERLLPY-TAQCVLAVDLAAGEMKVEWDADF 178
            +  ++ETG+NDV+VVK     +   +ERL+P+   Q +  VD  A  ++V+WD  F
Sbjct: 128 VVTDMMETGSNDVLVVKANLKDAFGQKERLIPFLEEQVIKVVDRQAQRIEVDWDPAF 184