Pairwise Alignments

Query, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

Subject, 311 a.a., tyrosine recombinase XerC from Vibrio cholerae E7946 ATCC 55056

 Score =  164 bits (414), Expect = 3e-45
 Identities = 106/300 (35%), Positives = 168/300 (56%), Gaps = 13/300 (4%)

Query: 3   AIDHPLIDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNL----ELVNAG-RELIL 57
           A+  PL +RF   L  EKGLS  T++ Y+  L     +L +  L    +L +A  R+L++
Sbjct: 12  ALAQPL-ERFYAYLHTEKGLSLYTQRNYKQQLETMTQYLVQVGLTHWTQLDSAWVRQLVM 70

Query: 58  DHLAWRLEQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKSLSEA 117
                   Q  K  S A  LS +R F  +L+    +  +P   V  P+  R LPK+L   
Sbjct: 71  QGK----RQGMKASSIATRLSSLRSFLDFLILRGELQANPAKGVSAPRKQRTLPKNLDVD 126

Query: 118 DVEALLAAPDLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLRVMGKGSKE 177
           ++  LL   D  + +  RDRA++E++Y  GLR+ EL+S+ ++ VNL +G +RV+GKG+KE
Sbjct: 127 EMAQLLEVTD-DDPLSIRDRAIMELMYGAGLRLAELVSIDIKDVNLSEGEIRVIGKGNKE 185

Query: 178 RLVPMGEEAIVWVERYMRDARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI 237
           R V    +A  WV ++++  RS+L     +  LF S  G +++ ++   R+    +   +
Sbjct: 186 RKVWFAGQAQEWVGKWLK-LRSQLADSAET-ALFVSKLGTRISHRSVQKRMAEWGQKQAV 243

Query: 238 GKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHAKHHPR 297
              +SPH LRH+FATH+L    +LR VQ LLGH +++TTQIYTH+    L  ++ + HPR
Sbjct: 244 ASHISPHKLRHSFATHMLESSNNLRAVQELLGHENIATTQIYTHLDFQHLAQVYDQAHPR 303