Pairwise Alignments

Query, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

Subject, 330 a.a., site-specific tyrosine recombinase XerC from Sinorhizobium meliloti 1021

 Score =  149 bits (375), Expect = 1e-40
 Identities = 110/308 (35%), Positives = 157/308 (50%), Gaps = 16/308 (5%)

Query: 3   AIDHPLI----DRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQ-----EKNLELVNAGR 53
           AI HP +     R+L +L  E+ LS+ T  AY  D   F  +L         L  + A R
Sbjct: 25  AIGHPEVMAERRRWLASLAEERRLSEKTVDAYERDTRQFLTFLTGHLAGPPRLSDICALR 84

Query: 54  ELIL-DHLAWRLEQNYKPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPK 112
              L   LA R +     R+  R L+G+R F RYL R  L        V  P+  + LPK
Sbjct: 85  PADLRGFLAQRRKGGAGARTLGRGLAGLRSFLRYLERNGLANAAGAGAVRSPKQPKSLPK 144

Query: 113 SLSEAD-VEALLAAPDLSEA--IGQRDRAMLEVLYACGLRVTELISLTLEQVNLRQGVLR 169
           +L++ + ++ + A   L+E   I  R+ A+L +LY CGLR+ E + LT    +     LR
Sbjct: 145 ALTDREALKVVTADAQLAEEPWIAARNAAVLTLLYGCGLRIAEALDLTPADFSGPVTSLR 204

Query: 170 VMGKGSKERLVPMGEEAIVWVERYMRDARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIK 229
           V GKG K R+VPM   A   VE Y +     +    P + +F   RG ++        ++
Sbjct: 205 VTGKGGKTRIVPMIAAAAEAVETYRKLCPYHI---EPEEPIFRGARGAKLQPAIIQREMQ 261

Query: 230 HQAKVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQD 289
                 G+  + +PH LRH+FATHLL  G DLR +Q LLGH+ LSTTQ+YT V  ARL +
Sbjct: 262 KLRAALGLPDSATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGVDSARLLE 321

Query: 290 MHAKHHPR 297
           ++ + HPR
Sbjct: 322 IYDRAHPR 329