Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 579 a.a., single-stranded-DNA-specific exonuclease RecJ from Vibrio cholerae E7946 ATCC 55056

 Score =  663 bits (1711), Expect = 0.0
 Identities = 337/578 (58%), Positives = 431/578 (74%), Gaps = 9/578 (1%)

Query: 1   MRIDPRPLPAVLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL 60
           + I  RP P +      + PLL RLY +RGV + A+L+K+   L  ++QL GID AV+LL
Sbjct: 2   IEIQRRPEPDLSLLPDHIDPLLRRLYLSRGVSNVAQLEKAAKALHSFKQLHGIDRAVELL 61

Query: 61  VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV 120
             A+ +++RI++VGDFDADGAT+S +  L LR+LG+ +VDYLVPNRFE GYGL+PE+V  
Sbjct: 62  FAAIAEQKRIIVVGDFDADGATSSALSVLALRMLGSRNVDYLVPNRFEDGYGLSPEVVDQ 121

Query: 121 ALQRAPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEF 180
           A++R  ++++TVDNG+SS+EGV  AK  GLQV+VTDHHLPG ELP  DA+VNPN   C F
Sbjct: 122 AIERGAEMIMTVDNGVSSLEGVRYAKQKGLQVVVTDHHLPGQELPEVDAMVNPNLQQCAF 181

Query: 181 PSKALAGVGVIFYVLMALRARLRSLGWY--DNTPQPNIGELLDLVALGSVADVVPLDANN 238
           PSKALAGVGV FY++MAL   +R  GW+      +P + EL+DLVALG+VADVVPLD NN
Sbjct: 182 PSKALAGVGVAFYLMMALCVHMRQQGWFAAQGMVEPKLMELIDLVALGTVADVVPLDDNN 241

Query: 239 RILVHQGLERIRAGRARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGI 298
           RILVHQGL+RIRAG ARPGI+A++EVAKRDA R+ + D GF LGPR+NAAGRLDDMS G+
Sbjct: 242 RILVHQGLQRIRAGLARPGIQALIEVAKRDARRLVAADFGFALGPRINAAGRLDDMSFGV 301

Query: 299 ECLLTTDFAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPV---ESMPYGLCLFDP 355
           E LL  +  AAR MA++LDG+NQ RK IE+GM++EA+A  + L +     +PYGL LF  
Sbjct: 302 ELLLCNNIHAARRMASELDGLNQTRKEIEEGMKQEAVAFCERLQLSDDRELPYGLVLFQR 361

Query: 356 EWHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLI 415
           +WHQGVIGILASR+KE+Y RP IAFA+ GDG LKGS RSV G H+RDAL  + +Q+P +I
Sbjct: 362 DWHQGVIGILASRIKEKYHRPVIAFAEGGDGKLKGSCRSVPGLHMRDALDKIDTQNPGII 421

Query: 416 TKYGGHAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELAR 475
            K+GGHAMAAGLT+ E+NF  F   FD  VR +L E  L G +LSDG L  EEF L  A 
Sbjct: 422 LKFGGHAMAAGLTIEEQNFERFCRLFDQLVREELDEAALKGIILSDGELKPEEFSLHTAE 481

Query: 476 ALRHAGPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVL----KSECGSVKLDGIAFGVDR 531
            LR  GPWGQ FPEPLF G F+++ Q++VGE+HLK++L    K    +V +DGIAF VD 
Sbjct: 482 LLRAGGPWGQAFPEPLFDGEFKVLHQKLVGEKHLKLMLEPLYKGFPTNVMIDGIAFNVDL 541

Query: 532 EVWPNPTVRWVELAYKLDVNEFRGNETVQLMIAHIEPR 569
             WP+ +V+ V LAYKLD+NEFRGN+++QLMI H+E +
Sbjct: 542 RRWPDASVKTVRLAYKLDINEFRGNQSLQLMIDHLEAK 579