Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 571 a.a., single-stranded-DNA-specific exonuclease RecJ (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  268 bits (686), Expect = 3e-76
 Identities = 207/579 (35%), Positives = 293/579 (50%), Gaps = 42/579 (7%)

Query: 5   PRPLPAVLPFLG-----ELPPLLTRLYAARGVQSEAE----LDKSLARLIPYQQLKGIDA 55
           P P+ A  PF       E+  L+ RL   RGV S  +    L  +L  L P  +  G++ 
Sbjct: 9   PEPVAASPPFAAWAERLEVSELIVRLLWRRGVGSVDDMALYLSPNLRHLAPLAEWPGLEQ 68

Query: 56  AVDLLVTALEQRQRILIVGDFDADGATASTV--GTLGLRLLGAAHVDYLVPNRFEYGYGL 113
           A   L   L       + GD+D DG T++ +  G L    + AAH    +P+R E GYGL
Sbjct: 69  AASTLADGLLAGLPFAVWGDYDVDGVTSTALVKGVLAQHGMAAAHH---IPDRREEGYGL 125

Query: 114 TPEIVAVALQRAPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNP 173
               V    ++  +LL+TVD GIS VE V  A+  G+ V+V+DHH+P + LP A+AI NP
Sbjct: 126 NVAWVERLAEQGVRLLLTVDCGISDVEPVRRARELGMTVVVSDHHMPPEGLPDANAICNP 185

Query: 174 NQPGCEFPSKALAGVGVIFYVLMALRARLRSLGWYDNTPQPNIGELLDLVALGSVADVVP 233
               C  P  ALAGVGV F V+ A+ A L          + ++ + LDLVALG++ADVV 
Sbjct: 186 RLAEC--PCPALAGVGVSFLVMAAVNAALAE----RTGKKADMRDFLDLVALGTLADVVN 239

Query: 234 LDANNRILVHQGLERIRAGRARPGIKAILEVA-KRDAARITSTDLGFILGPRLNAAGRLD 292
           L   NRILV  GL +I   R RPG+ A+  V+     A I +  + F L PR+NAAGR+ 
Sbjct: 240 LHGQNRILVKNGLLKIAEAR-RPGMAALKTVSGYNPTAAIGAGQVVFGLAPRINAAGRMG 298

Query: 293 DMSLGIECLLTTDFAAAREMAAQLDGMNQDRKSIE----QGMQREALAQLKDLPVESMPY 348
              L ++ LLT D A A  +A +LD  N  R++ E       +++A  QL  +       
Sbjct: 299 KAELALQLLLTDDHAEAARLAQELDAENARRRAEEDRILDAAKKQAEGQLDRM------- 351

Query: 349 GLCLFDPEWHQGVIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVA 408
           GL L   +WH GVIGI+ASR+ + ++RPT+  +  G   +KGSGRSV  F +   L   A
Sbjct: 352 GLVLHGDDWHPGVIGIVASRIVDEFYRPTLILSSDGQS-MKGSGRSVAEFDLHAGLTRCA 410

Query: 409 SQHPNLITKYGGHAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVE- 467
               +L T +GGH  AAG+++P  +     E FDA VR +L +  LT RL  DG L    
Sbjct: 411 ----DLFTAFGGHHQAAGMSMPASHVDTLRERFDAVVRAELGDTPLTPRLKLDGELGFAL 466

Query: 468 EFHLELARALRHAGPWGQHFPEPLFHGVFQLV-EQRVVG--ERHLKVVLKSECGSVKLDG 524
                L + L    P+G    EP+F     LV + R  G    H+++ L  E   + L  
Sbjct: 467 AGDFTLLKELEMLQPFGTGNAEPVFASPPVLVRDLRRFGPTRDHVELQLTDESCGITLRA 526

Query: 525 IAFGVDREVWPNPTVRWVELAYKLDVNEFRGNETVQLMI 563
            A+    +   +     V LAY   ++ + G  +V L I
Sbjct: 527 KAWRQSGQFPDSLRGTRVRLAYTPRIDRYNGAASVDLRI 565