Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 565 a.a., single-stranded DNA exonuclease from Cupriavidus basilensis FW507-4G11

 Score =  549 bits (1414), Expect = e-160
 Identities = 300/554 (54%), Positives = 381/554 (68%), Gaps = 14/554 (2%)

Query: 18  LPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFD 77
           L P L R+ +ARGV+  AEL   L  L P   +KGID A   L  A+   +R+LIV D+D
Sbjct: 22  LHPTLARILSARGVREPAELATELPGLAPPAAMKGIDHAATYLADAIAAGRRLLIVADYD 81

Query: 78  ADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRAPQLLITVDNGIS 137
            DGATA  VG  GLR+LGA  +DY+VPNRFEYGYGLTPEIVA+A ++ P +++TVDNGI+
Sbjct: 82  CDGATACAVGVRGLRMLGA-RIDYIVPNRFEYGYGLTPEIVALAARQQPDVIVTVDNGIA 140

Query: 138 SVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMA 197
           SV+GVAAA A G+ V+VTDHHLPGD+LP A  IVNPNQPGCEFPSK LAGVGV+FYVL+A
Sbjct: 141 SVDGVAAANALGIDVVVTDHHLPGDQLPDAAVIVNPNQPGCEFPSKNLAGVGVMFYVLLA 200

Query: 198 LRARLRSLGWYDNTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARPG 257
           LRA LR  G +D   QP +  LLDLVALG+VADVV LD+NNRILV QGL+R+RAGR   G
Sbjct: 201 LRAELRRRGVFDAQTQPRLDTLLDLVALGTVADVVKLDSNNRILVAQGLKRMRAGRMHAG 260

Query: 258 IKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDFAAAREMAAQLD 317
           + A+   A R+A R  + DLGF +GPRLNAAGRL DMSLGIECLLT D   A E+A +LD
Sbjct: 261 VAALFRAAGREATRANTFDLGFGVGPRLNAAGRLADMSLGIECLLTDDANRAWEIAQELD 320

Query: 318 GMNQDRKSIEQGMQREALAQLKDLPVESMP----YGLCLFDPEWHQGVIGILASRMKERY 373
           GMN++R+ IE GMQ+EAL Q+ + P+ ++     + + +F+  WHQGVIGI+ASR+KE+Y
Sbjct: 321 GMNRERRDIEAGMQQEAL-QILEGPLGALDPAARFTVSVFNDTWHQGVIGIVASRLKEKY 379

Query: 374 FRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGGHAMAAGLTLPEEN 433
            RPTI FA   +  +KGSGRS+ GFH+RDAL +V+ +HP L+ K+GGHAMAAGLTL  ++
Sbjct: 380 HRPTITFAPGDEDTIKGSGRSIPGFHLRDALDLVSKRHPGLLKKFGGHAMAAGLTLGADS 439

Query: 434 FPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFH 493
           F  F EAF+A  R  L +E L   + +DG +    F  E    L     WGQ FP P F 
Sbjct: 440 FGQFMEAFEAVGREWLSDEQLARVIETDGDIEDACFSPEFVSLLEQQ-VWGQGFPAPTFC 498

Query: 494 GVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNEF 553
           G F ++ Q V+  +HLK+ L    GS + D I F     +  +  V     AY+LD N F
Sbjct: 499 GEFDVLRQSVLKGKHLKLQLGR--GSQRFDAIWFNHADSLGASALV-----AYRLDNNTF 551

Query: 554 RGNETVQLMIAHIE 567
            G   VQ++I H +
Sbjct: 552 NGITRVQMVIEHAQ 565