Pairwise Alignments

Query, 880 a.a., membrane protein from Pseudomonas simiae WCS417

Subject, 875 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  558 bits (1437), Expect = e-163
 Identities = 325/852 (38%), Positives = 474/852 (55%), Gaps = 17/852 (1%)

Query: 33  RQPIGLAVTLLLFAIALIACRHLLLELDLYALHDSILEVPKPALLGAFAAAVAGFIILLG 92
           R  +  A  +++ A+   A  H+  E+D   +  ++   P  A+  A       F+ L  
Sbjct: 33  RHALASAAGVVVLAVLSFAIYHMAREVDFQDVLAALRGTPWHAVGWAVLLTAVSFLSLSV 92

Query: 93  YEFSGARYAGVNLPAKTLALGGFTAFAIGNAIGLSMLSGGSVRYRLYARHGIGASEVARM 152
           Y+     + G  +P   +AL  F ++A+GN  G   L+GG++R+R YA  G+    V ++
Sbjct: 93  YDVEALAHIGHKVPYPVVALTSFCSYAVGNTAGFGPLTGGAIRFRFYAPMGLEPECVGKV 152

Query: 153 TVFASLALGTALPPLAALATLSNLPAASTYLHLPQAVLGGIAGAVLLLSAALCIGIYRRR 212
            VF + A G  L  + AL+ L      +  L LP   L G  GAVL +   L + + R  
Sbjct: 153 VVFVTAAFGLGLTAVTALSLLVAADDVAGVLSLPPLALQG--GAVLAIGGLLAL-VVRAS 209

Query: 213 LPEQPYPDNLLVKAGRRTLRLPGRRLTFLQLIITALDVAAAATVLYMLLPEAP-PFGPFL 271
            PE        V  GR  LRLP  R+   Q   TA+D+ A A +L++LLPE    F  F+
Sbjct: 210 RPESK------VALGRVALRLPRPRIMLGQFAATAVDIVACAGILWVLLPEIGLGFPAFV 263

Query: 272 LVYLLALAAGVLSHVPGGVGVFEAILLAAFADKLGAAPLAAALLLYRMIYVVLPLLIACV 331
            +Y +A+  GVLSHVP G+GVFE I++A          +  AL+LYR+IY +LPLL+A V
Sbjct: 264 TLYAVAIGLGVLSHVPAGLGVFETIMIATLGRLAPMDQILGALVLYRVIYHILPLLLATV 323

Query: 332 FLLVNEAQRLFQ---TQQSLRVASGLAAPVLAVLVFLSGVVLLFSGATPEIDSRLENIGF 388
            + + E +R        + +R AS +A PV++ +  + G +L+FSG TP +   L+ +  
Sbjct: 324 LVSIVETRRAMAGPAASKVVRSASQMAPPVISAMTLVLGAMLIFSGVTPALPGDLDILDA 383

Query: 389 LIPHRLIDASHFGASLIGVLCLLLAQGLRRRLSAAWMLTMVLLLVGALLSLLKGFDWEEA 448
            I   +++++HF AS++G+  +++A+GL  RL  AW   +    +  +LS+LK     EA
Sbjct: 384 WIALPIVESAHFLASVLGLALVIVARGLAFRLDGAWWAAIAAAALAVVLSVLKAVALGEA 443

Query: 449 SLMTMTAILLAIFRRSFYRASRLTELPFSPLYLVASVCVLGASIWLLLFAYQDVPYSHQL 508
            ++++  + L   R  F R + L     +P +L A   ++ ++  LL   YQ V Y+  L
Sbjct: 444 IVLSVLVLALLATRAEFSRPASLLHQTLTPPWLAAIATIVISAFVLLFLTYQGVDYTDDL 503

Query: 509 WWQFTLDANAPRGLRSLLGAAVVLVIVSLTWLLRTARPVIHLPTPDELERASKILMASSQ 568
           WWQF +   APR LR+LL  ++     ++  LLR A    HLP+P E++RA  IL     
Sbjct: 504 WWQFEISNEAPRSLRALLAVSLGAGSFAIWNLLRPAPGRTHLPSPQEIDRALAILETQPM 563

Query: 569 PDGGLALTGDKALLFHPNDEAFLMYARRGRSLVALYDPIGPTQQRAEMIWQFRDLCDIHH 628
               L   GDK+L+F  + +AF+MY R+GRS VAL+DP+G      E++W+F +      
Sbjct: 564 AAANLLRMGDKSLMFSEDGKAFIMYGRQGRSWVALFDPVGARDSWPELVWRFVETARASG 623

Query: 629 ARPVFYQVRAENLPYYMDIGLTAIKLGEEARVDLKRFDLEAKGKEMKDLRYTWNRGSRDG 688
            R  FYQV  ENL  Y D GL+A KLGEEAR+ L  F L   G +   LR T +R SRDG
Sbjct: 624 GRAAFYQVVPENLALYADAGLSAFKLGEEARIPLADFSL--SGSKRYGLRQTVSRCSRDG 681

Query: 689 LSLEICEPG--TAPMDELKVISDAWLTGKNVREKGFSLGRFSDDYLKHFRIAIIRFEGRP 746
           L   +  P    A MD L+ ISDAWL     REK FSLG F   Y++   +A++R   + 
Sbjct: 682 LVFSLLSPDEIAAEMDRLEEISDAWLASHRAREKRFSLGAFDRSYVQSQTVAVLRRADQI 741

Query: 747 VAFANLLETYNHDLASLDLMRAHPDAPKLTMEFMMVGLIQHYKSHGYARFSLGMVPLSGL 806
           VAFA ++ T   + A++DLMR   +AP+  MEF+ + L++H+K+ GY R  LGM PLSGL
Sbjct: 742 VAFATVMTTALTEEATIDLMRFDDEAPRSAMEFLFIRLMEHFKAAGYDRLHLGMAPLSGL 801

Query: 807 QPRRGAPLTQRLGSMVFRRGEQLYNFQGLRRFKDKFQPDWEPRYMAVPAGLDPLVALADT 866
                AP   R+G  VF  GE+ YNFQGLR FK KFQP+W+PRY+AV  GL+P +ALAD 
Sbjct: 802 SSSPAAPFWHRVGRAVFEHGERFYNFQGLRAFKAKFQPEWQPRYLAVAGGLNPALALADI 861

Query: 867 AALIAGGLTGLV 878
           A LI GGL G+V
Sbjct: 862 ATLIGGGLKGVV 873