Pairwise Alignments

Query, 352 a.a., DNA polymerase IV from Pseudomonas simiae WCS417

Subject, 421 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score =  203 bits (517), Expect = 6e-57
 Identities = 131/348 (37%), Positives = 184/348 (52%), Gaps = 14/348 (4%)

Query: 6   IIHVDCDCFYAAIEMRDDPSLAQKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRHAL 65
           I H+DCD FYA++E RD+PSL  +PL VG    R GV  T  Y AR +G RSAM     L
Sbjct: 38  IAHIDCDAFYASVEKRDNPSLRDRPLIVGHPGGR-GVATTACYIARRFGARSAMPMFKCL 96

Query: 66  KLCPDLTIVKPRMEAYKEASKEIQTIFRDYTDLIEPLSLDEAYLDVSDSSH-FGGSATRI 124
           +LCP+  ++ P M  YK  S +++ I  + T  +EPLSLDEAYLD+S+  H F       
Sbjct: 97  ELCPEAVVIPPDMAKYKAVSAQVRAIMLEATHRLEPLSLDEAYLDLSEGEHRFARPPAVS 156

Query: 125 AQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLFVITPDQVEDFVSQLRVSKLH 184
              I RRV  ++ ITVS G++ N+FLAK+ASD  KP G  VI   +    ++ + V +LH
Sbjct: 157 LATIARRVEREIGITVSIGLSSNRFLAKLASDMNKPQGFTVIDEAEAPALLAPMPVKRLH 216

Query: 185 GVGKVTADKLARLGIEDCLQLREWNKLALVREFGSFGERLWSLARGIDDRVVQNDSRRQS 244
           GVG  T  +LA LG+     L+   +  L+  FG  G  L + A G   R +  D   +S
Sbjct: 217 GVGAATERRLAELGLHTIGDLQGRPEADLLARFGKIGRALHAHAWGRGGRTISPDRETKS 276

Query: 245 ISVENTYDVDLPDLSSCLAKLPELMETLAGRMARIDSSYRAGKPFVKVKFHDFTQTTLEQ 304
           IS E T++ DL  L      L  L E +A  + R  ++       +K+K HDF   T   
Sbjct: 277 ISAETTFERDLSRLPDLARALGPLSERVARALTR--NALAGATVVLKLKTHDFRILT-RH 333

Query: 305 AGAGRDLESYQQLLTQAFNR------GGKPVRLLGIGVRLLDLSNGNE 346
           A  G D  +  +++  A  R       G+  RL+G+G  + DL  G+E
Sbjct: 334 ARLG-DPTARAEVIAGAARRLLERETDGRRFRLIGVG--MADLRPGSE 378