Pairwise Alignments

Query, 1008 a.a., acriflavine resistance protein B from Pseudomonas simiae WCS417

Subject, 1040 a.a., hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) from Shewanella loihica PV-4

 Score =  575 bits (1482), Expect = e-168
 Identities = 346/1030 (33%), Positives = 576/1030 (55%), Gaps = 34/1030 (3%)

Query: 4    TDVFIRRPVLAMVVSLLIVLLGFQAYSTLPLRQYPSMENALITVTTAYPGANAETIQGYI 63
            ++ FI RP  A V+S ++ L+G  +   L + ++P +    ++V+T+Y GA+A+ ++  I
Sbjct: 3    SEFFIHRPKFAFVISTVLTLVGLISIPILSVAEFPEIAPPQVSVSTSYSGASADIVKDTI 62

Query: 64   TQPLQQSLASAEGIDYMTSVSRQNFSV-ISIYARIGSNSDRLFTELLAKANEVKNKLPQD 122
             QP++  +   EG+ YM S S  + S  +++   +G+++D    ++  +  +   +LP++
Sbjct: 63   AQPIEAEVNGVEGMLYMQSKSANDGSYSLNVTFDVGTDADMAQVKVQNRVQQAMPRLPEE 122

Query: 123  AEDPVLSKEAADASALMYISFSSGQ--LSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180
             +   +  E    + LM ++  S      +  IT+Y    ++  LA   G+++ +++G  
Sbjct: 123  VKRQGVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVSKVQVIGAL 182

Query: 181  VFAMRIWLDPVKLAGFGLSASDITDAVRRYNFLSAAGEV-------KGEFVVTSINANTD 233
             +A+RIWLDP ++A FG++ASD+  A+R  N   AAG +       + +F  T +     
Sbjct: 183  DYAIRIWLDPNQMASFGVTASDVIAALREQNIQVAAGRIGAAPVDPQQQFQYT-LQTKGR 241

Query: 234  LKSAEAFGAISVKTDGD-SRVLLRDVARVEMGAENYNAISSFGGTPSVYIGIKATPSANP 292
            LK  E FG + ++ + D S+V++ DVARVE+G++ Y+A       PS  I I   P AN 
Sbjct: 242  LKDPEEFGRVMIRANPDGSKVIVSDVARVELGSQTYDAQGKLNNKPSAIIAIYQAPDANA 301

Query: 293  LDVIKEVRKILPELESQLPPNLKAEIAYDATLFIQASINEVVKTLFEAVLIVIVVVFLFL 352
            L+V K ++  +  L S+ P +L+ ++ YD T F++ SI EVV+TLF +V +V+ VV++FL
Sbjct: 302  LEVAKAIKAEMDTLASRFPDDLEYKVLYDTTEFVETSITEVVQTLFISVALVVFVVYIFL 361

Query: 353  GALRSVVIPVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRH 412
               RS ++P I IP+S+IG   F+   G SIN ++L A++LAIG+VVDDAIVVVEN+ R 
Sbjct: 362  QDARSTLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENVTRL 421

Query: 413  IE-EGKTPLDAALEGAREIALPVVSMTITLAAVYAPIGFLEGLTGALFKEFALTLAGAVI 471
            +E EG +P +A  +  +E+  PV++ T+ L AV+AP   + G+TG ++ +F++T+  +V+
Sbjct: 422  MEDEGLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVL 481

Query: 472  ISGIVALTLSPMMCALLLR-HDENPSGLAHRLDRMFDGLKRRYQRMLHGTLNTRPVVIVF 530
            IS + ALTLSP +CA LL+   ++  G  H  +  F+     Y +++   +  R +V+V 
Sbjct: 482  ISSVNALTLSPALCASLLKPPKKHTHGFHHLFNTYFERFTGGYMKLVSSLV--RKLVLV- 538

Query: 531  ALIVLCLIPV---FLKFTQSQLAPDEDQGIIFMIASAPQPTNLEYLNTYTDEFINIFKAF 587
             +   CLI V     K   S   P ED+    +    P   +L          + + +  
Sbjct: 539  GVAYACLIGVTGGIAKVLPSGFVPMEDKKAFMVDIQLPDGASLNRTEEVMRNLVKLTQEE 598

Query: 588  PEYYSSFQINGFN---GVQSGIGGFL---LKPWNERDRTQM---QILPEVQKRLEQIPGL 638
            P   +    +GF+   G  S  GG +   L  W ERD   M    I+ ++Q +    P +
Sbjct: 599  PGVENVIHASGFSILTGSVSSNGGLMIVTLSTWEERDSPDMVEAAIVAKLQAKYAANPSV 658

Query: 639  QVFGFNLPSLPGTGEGLPFGFVI--NTANDYESLLEVANRVKKRAMESGKFAFVDIDLAF 696
            +   F+LP +PG G    F FV+        + L  V   +  +A    + A    +   
Sbjct: 659  KAMAFSLPPIPGVGSVGGFEFVLQDTQGRSPQELASVMRALIMKANGQPEIAMAFSNFRA 718

Query: 697  DKPEVVVDIDRAKAAQMGVSMQDLGGTLATLLAEAEINRFTLDGRSYKVIAQVERTYRDN 756
            D P++ VD+DR KA  +G+S+ ++  T+ T+L    +N F   G+ ++VI Q E  +R++
Sbjct: 719  DVPQMYVDVDRDKAKALGISLNEIFSTMQTMLGSMYVNDFNRFGKVFRVILQAEGEFRNS 778

Query: 757  PEWLNNYYVKNAQGEVLPLSTLITVTDRARPRQLNQFQQLNSALISGFPI--VSMGEAID 814
             + + ++YV++A GE++PLSTL+ VT    P  +N +   +S  I+GFP    S G+AI 
Sbjct: 779  DKDIASFYVRSASGEMVPLSTLVKVTPILGPDVMNAYNMFSSTTINGFPAPGFSSGDAIA 838

Query: 815  TVRQIAIEETPPGYAFDYSGASRQFIQEGTALWATFGLALAIIFLVLAAQFESFRDPLVI 874
             + + A E  P GY F+++G + Q I+ G      F LAL   +L L AQ+ES+  P  +
Sbjct: 839  AMERAAQETLPAGYKFEWTGQTYQEIKAGNLAPLIFALALVFTYLFLVAQYESWSIPFAV 898

Query: 875  LVTVPLSICGALIPLFLGWSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRKDKGLTPR 934
            ++ VP++I GA + + L  S +N+Y Q+GLV LIGL  K+ ILIVEFA QLR ++G +  
Sbjct: 899  MLAVPIAILGAFLNILLVGSELNLYAQIGLVLLIGLACKNAILIVEFAKQLR-EEGKSIL 957

Query: 935  QAVEEAAAIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGMVIATGMSIGTLFTLFV 994
             A E AA +R R VLMT  + + G++PL++ATGAGA SR  +G  +  GM   TL    +
Sbjct: 958  DAAETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMMAATLVGTLL 1017

Query: 995  LPCVYTLLAK 1004
            +P  Y ++ K
Sbjct: 1018 VPVFYVIMQK 1027



 Score = 62.8 bits (151), Expect = 1e-13
 Identities = 40/164 (24%), Positives = 75/164 (45%)

Query: 844  TALWATFGLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMNIYTQVG 903
            T +  T  +++A++  V+    +  R  LV  + +P+S+ G    L     S+N  +   
Sbjct: 340  TEVVQTLFISVALVVFVVYIFLQDARSTLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFA 399

Query: 904  LVTLIGLISKHGILIVEFANQLRKDKGLTPRQAVEEAAAIRLRPVLMTTAAMVFGMVPLI 963
            L+  IG++    I++VE   +L +D+GL+P +A  +A      PV+ TT  ++    P  
Sbjct: 400  LILAIGIVVDDAIVVVENVTRLMEDEGLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTA 459

Query: 964  LATGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCVYTLLAKPDK 1007
            +  G          + I   + I ++  L + P +   L KP K
Sbjct: 460  VMPGITGQMYAQFSVTICISVLISSVNALTLSPALCASLLKPPK 503



 Score = 57.8 bits (138), Expect = 4e-12
 Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 343  IVIVVVFLFLGA-LRSVVIP---VITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLV 398
            + +V  +LFL A   S  IP   ++ +P++++G    + L+G  +NL   + +VL IGL 
Sbjct: 876  LALVFTYLFLVAQYESWSIPFAVMLAVPIAILGAFLNILLVGSELNLYAQIGLVLLIGLA 935

Query: 399  VDDAIVVVENIHRHIEEGKTPLDAALEGAREIALPVVSMTITLAAVYAPIGFLEGLTGAL 458
              +AI++VE   +  EEGK+ LDAA   AR     V+    +      P+    G     
Sbjct: 936  CKNAILIVEFAKQLREEGKSILDAAETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGS 995

Query: 459  FKEFALTLAGAVIISGIVALTLSPMMCALLLRHDENPSG 497
             +    ++ G ++ + +V   L P+   ++ +  E   G
Sbjct: 996  RRALGYSVFGGMMAATLVGTLLVPVFYVIMQKLRERMKG 1034