Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 364 a.a., efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  117 bits (293), Expect = 5e-31
 Identities = 97/368 (26%), Positives = 160/368 (43%), Gaps = 26/368 (7%)

Query: 9   MLGVVLLIVLLLAGYKAFSIYQQIQVFSKPKPAVSVAVATATEQPWQLRVSSVGTLKALQ 68
           +L  V+   LLLAG        +    S P P V  A+           ++  G ++A Q
Sbjct: 15  LLSAVIASALLLAGCG------EAPQISAPAPVVKPALTEIVASQRASDLTFNGVVRAAQ 68

Query: 69  GVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADLGLAQLDYGRGSQ 128
             +L+  I+G + D+  + G +VK GQ L  LDS      LE AQ +L   + +Y R   
Sbjct: 69  RADLAFRISGRLTDIAVKEGDQVKKGQLLASLDSRDAKTALEAAQLELKNTEQEYRRAKA 128

Query: 129 LVG-SQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLAS 187
           +   +QAISK E D+++ +    K  V + K  L    I APF G I  + ++    + +
Sbjct: 129 IFEKTQAISKAELDKVTNRYDLAKNRVEEAKRKLEYTQITAPFDGVISEKTIENFAQVQA 188

Query: 188 GTVIATLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAINPKVENST 247
             VI  LQDL+ L V   IP   +           E+SA P +QF   +   + +  + +
Sbjct: 189 NQVIMILQDLNDLEVAIEIPHRVMLSGVRNTRAIAELSAIPNQQFDLKLRTYSTQPSSDS 248

Query: 248 RNVLVRATLANPEG-KLLPGMFTRLDVLLPNPAPQ---IVVPEGAITYTLYGNSVYAVAE 303
           +   V     + +G +++PGM  ++  +   PA +   I +P  A+     G     V  
Sbjct: 249 QTYSVVLGFEDLKGFRVMPGMSAKVIPVADKPADENTLITLPLTALVPDNQGKQFVWVVN 308

Query: 304 KKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTP 363
            + +               AE+R+V+ G      V++++ LK GEQV+ AG   +  G  
Sbjct: 309 AQNQ---------------AEKRYVDIGTTYKDRVVITQHLKPGEQVIIAGVSSVREGMT 353

Query: 364 IAISPDKN 371
           +    D N
Sbjct: 354 VRPYTDNN 361