Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 352 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  163 bits (413), Expect = 6e-45
 Identities = 104/327 (31%), Positives = 169/327 (51%), Gaps = 19/327 (5%)

Query: 40  PAVSVAVATATEQPWQLRVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQ 99
           PA+SV   +   Q     +S VG LKA Q V+++ E+AG V  +  ++ Q+VK GQ L++
Sbjct: 30  PAISVVTESVQSQQISQSLSVVGKLKAEQSVDIAAEVAGKVDMIAVQANQQVKKGQILIK 89

Query: 100 LDSAVESALLETAQADLGLAQLDYGRGSQLVGSQAISKGEFDRLSAQLQKNKATVNQLKA 159
           LD     A L  A+A L   Q       +L+   AI+  E D   A+++  +A +N  +A
Sbjct: 90  LDDDKAQAALVEAKAYLQDEQRKLTEYERLLKRNAITPTEIDAQRARVEIGQARLNAAQA 149

Query: 160 SLAKKHIVAPFGGTIGIRQVDVGDYLASGTVIATLQDLSSLYVDFYIPEHAVPKVAPGQP 219
           +LA  HI APF GT+G      G ++++G+ + TL +LS + +D  IPE  +P+++ G  
Sbjct: 150 NLADLHITAPFDGTVGFIDFSRGKWVSAGSELLTLDNLSLMRLDLQIPERYLPQLSKGMK 209

Query: 220 VQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATLANPEGKLLPGMFTRLDVLLPN-P 278
           VQ    A+P  QF GS+ A++ ++   T N+ VR    NP+ +L PGM     +  P   
Sbjct: 210 VQGSSEAWPNVQFEGSVVAVDSRINQETLNLRVRVHFPNPDQRLKPGMLMSARIHFPAIS 269

Query: 279 APQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKPLLIAERRFVETGERRGGLV 338
           AP  ++P  A+ Y+     VY + E                  +A+RR V  G R    V
Sbjct: 270 AP--IIPVQALEYSGTKRFVYVIGEDN----------------VAKRREVSLGARVENQV 311

Query: 339 LVSKGLKAGEQVVSAGQLKLDNGTPIA 365
           ++ KGL+ GE++V  G + + +   ++
Sbjct: 312 VIEKGLQIGEKIVVQGIVNMRDNARVS 338