Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 368 a.a., MexH family multidrug efflux RND transporter periplasmic adaptor subunit from Vibrio cholerae E7946 ATCC 55056

 Score =  233 bits (594), Expect = 6e-66
 Identities = 133/359 (37%), Positives = 203/359 (56%), Gaps = 17/359 (4%)

Query: 12  VVLLIVLLLAGYKAFSIYQQIQVF----SKPKPAVSVAVATATEQPWQLRVSSVGTLKAL 67
           ++L+ +LL      F++++Q ++     ++P+P   V V TA    W   + ++G ++  
Sbjct: 8   MLLIAILLFGSVIGFNLFKQQKIAEYLANRPEPEFPVTVVTANPVDWVPVIEAIGFIEPN 67

Query: 68  QGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADLGLAQLDYGRGS 127
           QGV L+ E AG +  + FESG +V   QPLV LDSAVE A L++ +A L  A+  Y R  
Sbjct: 68  QGVTLTTETAGVIDQITFESGTQVAKDQPLVLLDSAVERANLKSTEARLPAAKAKYERYK 127

Query: 128 QLVGSQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLAS 187
            L    +ISK  +D   A      A +  LKA++A++ I APF G IGIR V +G YL  
Sbjct: 128 GLFAKGSISKESYDEAEASYYALSADIESLKATIARREIKAPFAGVIGIRNVFLGQYLQP 187

Query: 188 GTVIATLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAINPKVENST 247
           GT I  L+D S + + F +P+  + +++  Q V + V AYP   F GSISAI P V   +
Sbjct: 188 GTDIVRLEDTSVMRLRFTVPQRDISRISLDQEVDIFVDAYPQTSFKGSISAIEPAVSVQS 247

Query: 248 RNVLVRATLANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTE 307
             + V+A + N +GKL  GMF R +++LP    Q+ +P+ AITYTLYG++VY V+E   E
Sbjct: 248 GLIQVQADIPNSDGKLRSGMFARANIILPKLENQVTLPQTAITYTLYGDNVYIVSE---E 304

Query: 308 GGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTPIAI 366
            GE             ++  V+ GER   +  + +G+K G+ VV+ GQ++L NG  + I
Sbjct: 305 NGEKR----------VQQHVVKVGERSESIAHILEGVKPGDVVVTTGQVRLSNGAKVRI 353