Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 407 a.a., efflux RND transporter periplasmic adaptor subunit from Rhodopseudomonas palustris CGA009

 Score =  122 bits (307), Expect = 1e-32
 Identities = 100/355 (28%), Positives = 165/355 (46%), Gaps = 38/355 (10%)

Query: 41  AVSVAVATATEQPWQLRVSSVGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQL 100
           AV V VATA +  + + +S +GT++    V +   + G +  + F  GQ V+ G  L Q+
Sbjct: 60  AVPVTVATAQKADFPVYLSGLGTVQGFNTVLVRSRVDGQLDKIAFTEGQIVQAGDLLAQI 119

Query: 101 DSAVESALLETAQADLGLAQLDYGRGSQLVGSQAISKGEF-------------DRLSAQL 147
           D     A L+ A+A     + ++   +QL  S+++  GEF              +L+AQL
Sbjct: 120 DPRPFQAALDQAKAKKQQDEANFA-NAQLDLSRSVRLGEFATKQQTDTQRSNVQQLTAQL 178

Query: 148 QKNKATVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYL--ASGTVIATLQDLSSLYVDFY 205
             + A +   +  L    I AP  G  G+RQVD G+ +  AS T I T+  +  + V F 
Sbjct: 179 AADDAAIANAQTQLDYATIRAPISGVTGLRQVDKGNIVNAASQTGIVTIAQIEPIAVIFT 238

Query: 206 IPEHAVPKV------APGQPVQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATLANP 259
            PE  V  +       P Q + +   A       G+++ +N +V++++  V ++A  AN 
Sbjct: 239 APEERVFDINRALAARPLQVIALSTDAKTTFAEDGTLAVVNNQVDSNSGTVRLKAVFANK 298

Query: 260 EGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDADGKP 319
              L PG+  +  +L+      +VVP  A+ +   G   Y+V            DAD K 
Sbjct: 299 NHALWPGLSVQTRLLVKTLKDVVVVPNDAVQHGTDGLYAYSV------------DADNK- 345

Query: 320 LLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDNGTPIAISPDKNLPA 374
              AE R +  G       ++ +GL++G++VV  GQ K+  GTP+A     N PA
Sbjct: 346 ---AELRKLVVGPANDQNTVIERGLESGDRVVVGGQYKVKPGTPLAFKVADNEPA 397