Pairwise Alignments

Query, 376 a.a., RND transporter from Pseudomonas simiae WCS417

Subject, 372 a.a., HlyD family secretion domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  228 bits (580), Expect = 3e-64
 Identities = 127/372 (34%), Positives = 211/372 (56%), Gaps = 10/372 (2%)

Query: 2   LRRRMLIMLGVVLLIVLLLAGYKAFSIYQQIQVFSKPKPAVSVAVATATE-QPWQLRVSS 60
           +++  L ML + +L    + G+      +     +    A     A A E Q WQ  + +
Sbjct: 1   MKKWTLSMLAIAVLAFGSVIGFNLMVKSKIADAIANMPEAEFPVTAMALEMQKWQPTIDA 60

Query: 61  VGTLKALQGVNLSLEIAGTVKDVQFESGQKVKTGQPLVQLDSAVESALLETAQADLGLAQ 120
           +G ++  QGV +S E+AG V  + FE+G +V+ GQ L +LD+ VE A L++    L  A+
Sbjct: 61  IGFVEPHQGVTISNELAGRVTSINFENGSRVEKGQLLAELDAKVERANLKSKMVQLPAAE 120

Query: 121 LDYGRGSQLVGSQAISKGEFDRLSAQLQKNKATVNQLKASLAKKHIVAPFGGTIGIRQVD 180
            D+ R S+L   +++SK + D   ++    +A +  LKA++ ++ I APF G +GIR ++
Sbjct: 121 ADFKRLSKLYAQKSVSKQDLDNSESKYLALQADIESLKATIERREISAPFSGLVGIRNIN 180

Query: 181 VGDYLASGTVIATLQDLSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAIN 240
           +G+YL  GT I  L+D+S++ + F IP+  +P++A GQ + V V +YP + F G I+AI 
Sbjct: 181 LGEYLQPGTDIVRLEDISTMKIRFTIPQTQLPRIAVGQKIHVFVDSYPEQPFEGEIAAIE 240

Query: 241 PKVENSTRNVLVRATLANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYA 300
           P V   +  + V+A + N   KL  GMF R+ +LLP    Q V+P+ AI +TLYGNS+Y 
Sbjct: 241 PAVFYQSGLIQVQARIPNDNAKLRSGMFARVSILLPELNDQFVLPQTAINFTLYGNSIYL 300

Query: 301 VAEKKTEGGEVEKDADGKPLLIAERRFVETGERRGGLVLVSKGLKAGEQVVSAGQLKLDN 360
           +          + + +GK L   E+  +   ER G   LVS  LKAG+++V++GQ++L N
Sbjct: 301 IK---------DVEENGKKLARVEQINLTVLERNGNNALVSGALKAGDRIVTSGQIRLSN 351

Query: 361 GTPIAISPDKNL 372
            + + +  D+ L
Sbjct: 352 NSKVTVVEDQAL 363